Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31167
         (506 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   1.4  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   1.4  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    23   2.4  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    23   2.4  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   3.2  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   4.2  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   4.2  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   4.2  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   4.2  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   4.2  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   5.6  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   5.6  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   7.3  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   7.3  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   7.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   7.3  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -3

Query: 165 KGHVPPELESASESAKQVIERHDRRKHWLVT 73
           +G +PP        A   +ERH  RK W+ +
Sbjct: 221 EGLLPPVWVGGESEALARLERHLERKAWVAS 251


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 201 NNGYTNNLKKIVIQII 248
           NN Y NN KK+   II
Sbjct: 344 NNNYNNNCKKLYYNII 359


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 184 NSYTHEKGSRSA*ARECKRERETSDRE 104
           NSY +EK  R    R  +R R+  +RE
Sbjct: 48  NSYKNEKEYRKYRERSKERSRDKRERE 74


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 184 NSYTHEKGSRSA*ARECKRERETSDRE 104
           NSY +EK  R    R  +R R+  +RE
Sbjct: 48  NSYKNEKEYRKYRERSKERSRDKRERE 74


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 184 NSYTHEKGSRSA*ARECKRERETSDRE 104
           NSY +E+  R    R  +R R+ ++RE
Sbjct: 281 NSYKNEREYRKYRERSKERSRDRTERE 307


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 201 NNGYTNNLKKIVIQI 245
           NN Y NN KK+   I
Sbjct: 102 NNNYNNNCKKLYYNI 116


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 201 NNGYTNNLKKIVIQI 245
           NN Y NN KK+   I
Sbjct: 102 NNNYNNNCKKLYYNI 116


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 201 NNGYTNNLKKIVIQI 245
           NN Y NN KK+   I
Sbjct: 102 NNNYNNNCKKLYYNI 116


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 201 NNGYTNNLKKIVIQI 245
           NN Y NN KK+   I
Sbjct: 102 NNNYNNNCKKLYYNI 116


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 201 NNGYTNNLKKIVIQI 245
           NN Y NN KK+   I
Sbjct: 341 NNNYNNNYKKLYYNI 355


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +1

Query: 262 STTLTQHFLNINYANNLDFYAKRWL*IRRTNVAPSF 369
           S  +T   LN+N+ + +     RW+ +    V P F
Sbjct: 313 SVVVTIAVLNVNFRSPVTHRMARWVRVVFIQVLPRF 348


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 429 WKIFFNVAIFTMDTGYRM 482
           W I  +  IFTM TG+ M
Sbjct: 33  WIITNSFIIFTMQTGFGM 50


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 201 NNGYTNNLKKI 233
           NN Y NN KK+
Sbjct: 106 NNNYNNNYKKL 116


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 201 NNGYTNNLKKI 233
           NN Y NN KK+
Sbjct: 106 NNNYNNNYKKL 116


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 184 NSYTHEKGSRSA*ARECKRERETSDRE 104
           NSY +EK  R       +R R+ ++RE
Sbjct: 48  NSYKNEKEYRKYRETSKERSRDRTERE 74


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -2

Query: 145 ARECKRERETSDREARSAQTLA 80
           A + KRE+ ++ +E ++ +TLA
Sbjct: 601 ASKKKREKSSAKKERKATKTLA 622


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,107
Number of Sequences: 438
Number of extensions: 2921
Number of successful extensions: 16
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)