Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31166
(448 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac... 89 4e-19
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz... 76 2e-15
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon... 36 0.004
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom... 31 0.061
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb... 30 0.14
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|... 29 0.43
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 28 0.57
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 28 0.57
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 26 2.3
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 3.0
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 25 4.0
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|... 25 5.3
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R... 25 7.0
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 24 9.3
>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 483
Score = 88.6 bits (210), Expect = 4e-19
Identities = 39/62 (62%), Positives = 51/62 (82%)
Frame = +1
Query: 259 PSHIKVNLPALSPTMESGSIVSWEKKEGDKLSEGDLLCEIETDKATMGFETPEEGYLAKI 438
P+H +N+PALSPTM +G+I +++KK GDK+ GD+LCEIETDKA + FE +EGYLAKI
Sbjct: 51 PAHTVINMPALSPTMTTGNIGAFQKKIGDKIEPGDVLCEIETDKAQIDFEQQDEGYLAKI 110
Query: 439 LI 444
LI
Sbjct: 111 LI 112
>SPCC1259.09c |||pyruvate dehydrogenase protein x
component|Schizosaccharomyces pombe|chr 3|||Manual
Length = 456
Score = 76.2 bits (179), Expect = 2e-15
Identities = 42/94 (44%), Positives = 58/94 (61%), Gaps = 6/94 (6%)
Frame = +1
Query: 181 LLEHAQNQTVLSTP---QWTVQMRYY--SSLPSHIKV-NLPALSPTMESGSIVSWEKKEG 342
+L+H +Q V ++ +V+ RY+ S+L + +PALSPTME G+I W KEG
Sbjct: 1 MLKHYIHQCVKASSCKHSLSVKQRYFHCSALNGVASMFRMPALSPTMEEGNITKWHFKEG 60
Query: 343 DKLSEGDLLCEIETDKATMGFETPEEGYLAKILI 444
D GD+L E+ETDKATM E + G LAK+LI
Sbjct: 61 DSFKSGDILLEVETDKATMDVEVQDNGILAKVLI 94
>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
of oxoglutarate dehydrogenase complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 35.5 bits (78), Expect = 0.004
Identities = 13/58 (22%), Positives = 30/58 (51%)
Frame = +1
Query: 271 KVNLPALSPTMESGSIVSWEKKEGDKLSEGDLLCEIETDKATMGFETPEEGYLAKILI 444
++ P ++ G++ W K+ G+ +++ + + +ETDK P+ G L + L+
Sbjct: 44 RIKTPPFPESITEGTLAQWLKQPGEYVNKDEEIASVETDKIDAPVTAPDAGVLKEQLV 101
>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1185
Score = 31.5 bits (68), Expect = 0.061
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 307 SGSIVSWEKKEGDKLSEGDLLCEIETDKATMGFETPEEGYLAKILI 444
SG+IV KEG K+ +GD++ + K + P G L + +
Sbjct: 1122 SGTIVEIRVKEGAKVKKGDIIAVLSAMKMEIVISAPHSGVLKSLAV 1167
>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 504
Score = 30.3 bits (65), Expect = 0.14
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +1
Query: 184 LEHAQNQTVLSTPQWTVQMRYYSSLPSHIKVNLPALSPTMESGSIVSWEKKEGDKLSE 357
L Q Q +++ P W YY +P H + L T+ S WE++ G++ ++
Sbjct: 257 LRFTQRQILMNDPYWNRGF-YYDGVPPHTGMKLAREVATISYRSGPEWEQRFGNRRAD 313
>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 664
Score = 28.7 bits (61), Expect = 0.43
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +1
Query: 169 VTNKLLEHAQNQTVLSTPQWTVQMRYYSSLPSHIKVNLPALSP-TMESGSIVS 324
V+NK L HAQ + S P Q + + S PS + +++P T+E+G++ S
Sbjct: 177 VSNKSLPHAQQSIIRSFPDIQKQPKGFFSYPSS---TVSSIAPSTLEAGNLHS 226
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 28.3 bits (60), Expect = 0.57
Identities = 19/71 (26%), Positives = 32/71 (45%)
Frame = +1
Query: 82 RNQILSDGLKKAIRSNITRCISTELAKRKVTNKLLEHAQNQTVLSTPQWTVQMRYYSSLP 261
++ L D + IRS ++ LA +V + LE + + V T QW +M + +
Sbjct: 1060 KSPFLGDDEAREIRSKQSQGWGDVLADARVYHNWLEILETRGVKKTVQWCEEMHLHYTTL 1119
Query: 262 SHIKVNLPALS 294
I+ N LS
Sbjct: 1120 QQIRQNRNELS 1130
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 28.3 bits (60), Expect = 0.57
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +1
Query: 199 NQTVLSTPQWTVQMRYYSSLPSHIKVNLPALSPTMESGSIVSWEKKE 339
N + +TP W V+ S+L + + + PAL P+ V KK+
Sbjct: 646 NSSAANTPSWGVRKARASALNARSEEDFPALPPSTSKRISVQLGKKQ 692
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 26.2 bits (55), Expect = 2.3
Identities = 15/57 (26%), Positives = 24/57 (42%)
Frame = +1
Query: 277 NLPALSPTMESGSIVSWEKKEGDKLSEGDLLCEIETDKATMGFETPEEGYLAKILIP 447
N P T G +V + + G+ + G+ E+E K M E+G + I P
Sbjct: 708 NDPTQLRTPSPGKLVRFLVETGEHIKAGEAYAEVEVMKMIMPLVATEDGVVQLIKQP 764
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.8 bits (54), Expect = 3.0
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 109 KKAIRSNITRCISTELAKRKVTN 177
K A+R+NI RC+ T + + N
Sbjct: 3460 KSAVRTNIERCVQTSIESKYYKN 3482
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 25.4 bits (53), Expect = 4.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 54 IDNVANNCVTESNLKRWS*ESYTVEH 131
I+NVANN + L WS Y V+H
Sbjct: 157 INNVANNSLKVKPLTLWSTLLYIVQH 182
>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 885
Score = 25.0 bits (52), Expect = 5.3
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = -1
Query: 91 FDSVTQLFAT-LSIFFTKTIPS 29
F+S T + +T L +FFT+T PS
Sbjct: 820 FESTTLVLSTGLDVFFTRTAPS 841
>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
Res1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 637
Score = 24.6 bits (51), Expect = 7.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 124 SNITRCISTELAKRKVTNKLLEHAQNQTVLST 219
S +++C LA++++T L A QTV T
Sbjct: 461 SELSKCHEASLAEKQLTYNLAMEALEQTVRET 492
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 24.2 bits (50), Expect = 9.3
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 229 TVQMRYYSSLPSHIKVNLP 285
T+ + YY ++P HI+ N P
Sbjct: 468 TLGIEYYGNIPVHIQENAP 486
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,912,201
Number of Sequences: 5004
Number of extensions: 39199
Number of successful extensions: 107
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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