Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31165
         (596 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0150 - 13422497-13422575,13423360-13423433,13423948-134241...    29   2.1  
03_01_0484 + 3692957-3693145,3694070-3694143,3694668-3694746           29   2.8  
01_06_1439 + 37374739-37375473                                         28   4.9  
05_06_0186 - 26207298-26208548,26208743-26208853,26209286-262095...    27   8.6  
04_01_0083 + 904473-905167,905247-905347,905902-905994,907322-90...    27   8.6  

>10_07_0150 -
           13422497-13422575,13423360-13423433,13423948-13424160,
           13425143-13425214,13425320-13425745
          Length = 287

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -3

Query: 147 RVSRCRAALRAPPRSFALAVAVLILSWAPCCGITASTHYYCCA 19
           +VS+ +  LR  P++      V ++    CCG     H+YCC+
Sbjct: 237 KVSKYKKGLRNGPKALK---PVPVIVRCKCCGRVKLPHFYCCS 276


>03_01_0484 + 3692957-3693145,3694070-3694143,3694668-3694746
          Length = 113

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -3

Query: 147 RVSRCRAALRAPPRSFALAVAVLILSWAPCCGITASTHYYCCA 19
           +VS+ +  LR  P++      V ++    CCG     H+YCC+
Sbjct: 63  KVSKYKKGLRNGPKALK---PVPVIVRCRCCGRVKLPHFYCCS 102


>01_06_1439 + 37374739-37375473
          Length = 244

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -3

Query: 159 CRGPRVSRCRAALRAPPRSFALAVAVLILSWAPCCGITASTHYYC 25
           C+ PR    RAA   PP   +  +A + L  A     T+S  + C
Sbjct: 38  CKNPRTQSFRAATAPPPPPGSRTIASIFLDSAESSFTTSSARHDC 82


>05_06_0186 -
           26207298-26208548,26208743-26208853,26209286-26209507,
           26209623-26209658
          Length = 539

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -3

Query: 135 CRAALRAPPRSFALAVAVLILSWAPCCGITASTHYYCCAFIGFQ 4
           CR A   PP S A A+  L+L+ +   G+ +      CA +  Q
Sbjct: 55  CRPATACPPASDAAAIDRLLLARSDLAGLVSQIDELVCAALECQ 98


>04_01_0083 +
           904473-905167,905247-905347,905902-905994,907322-907968
          Length = 511

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +1

Query: 1   LLKTNECTAVVMCASCDTTARRPTQDKHGNCKRK*TRGSAKGCPTPRYARPPATENH 171
           LL ++  ++     + DT+ RR     H + KRK         PTPR   P  + +H
Sbjct: 7   LLPSSSSSSSKTATATDTSDRRRHHHHHNHTKRKKKPPPPPLSPTPRTPPPAGSGSH 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,783,871
Number of Sequences: 37544
Number of extensions: 258791
Number of successful extensions: 699
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)