Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31164
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...    73   3e-14
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    28   1.5  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    27   2.5  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    27   3.4  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    26   4.4  
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc...    25   7.8  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    25   7.8  

>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score = 73.3 bits (172), Expect = 3e-14
 Identities = 34/95 (35%), Positives = 58/95 (61%)
 Frame = +3

Query: 3   NSYSSYDRFCPFYKTVGMLKNIITFYDMSRHAVESTAQSDNKVTWNVIRDAMGNVLYQLS 182
           N YS YDR CP YKT  M++N+I +Y  ++ AVE+       V W+ I+++  ++ Y+L+
Sbjct: 531 NGYSDYDRCCPLYKTYHMMRNMIAYYTKAKSAVET-----GSVPWSKIKESTSDIFYELT 585

Query: 183 SMKFKDPVKDGEPKIKADFDQLLEDMSAAFRNLED 287
           SMKF++P  +GE +I   ++ L + +   F  L +
Sbjct: 586 SMKFENP-NEGEKEIVEHYETLHKKIEDKFHTLTE 619


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -2

Query: 277 LRKAADISSKSWSKSALILGSPSFTGSLNFMEESW*STLPMASRMTFH 134
           L +AA +SS  WS + L+L + S +  L ++  +      MA+ + FH
Sbjct: 153 LGQAAGVSSTDWSCAQLLLAAVSISTDLKYIPTNQHIVGVMAAVIVFH 200


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
 Frame = +3

Query: 231 ADFDQLLEDMSAAFRNLED*TLYCL*NIIVIETLKFTEINFN-VKRKYSE*PKLILCVVA 407
           A FD +L++     + L+   L      I+   L   +   N VK  +++  +L+ C   
Sbjct: 427 ASFDMVLDESLQVLKKLQTLHLSFTLGDIIPNYLTLADYLLNFVKTSFAQIYELV-CSFV 485

Query: 408 NIIDILSSQHRL*LRTKECNVIIEL 482
           N + ++ S     LRT  C  I+ L
Sbjct: 486 NNVAVMESSSEKQLRTSRCLKIVRL 510


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -1

Query: 278 VAESGRHIF*KLVEIGLDLRFTVFHWVLELHGGELVEHVAHGVAD 144
           V ES   I+  L  +G+DL    FHW L ++   L  +++  + D
Sbjct: 643 VKESLPEIYSHLELLGVDLDAISFHWFLSVYTDTLPTNISFRIFD 687


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -1

Query: 83 VVERDDVLQHAHRLVERAEAIV 18
          +V+ DD LQ A++ VER E+++
Sbjct: 1  MVQLDDALQDAYKKVEREESLI 22


>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 621 KRQRAPLYIFRSRCSDAFY*RT 686
           KR RAPLYI  + CS  ++ R+
Sbjct: 7   KRLRAPLYIQNAYCSKNYFYRS 28


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -1

Query: 260 HIF*KLVEIGLDLRFTVFHWVLEL 189
           H++ K++E+ +DL+    +W   L
Sbjct: 360 HLYQKIIELDMDLKLITINWFFSL 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,536,235
Number of Sequences: 5004
Number of extensions: 50638
Number of successful extensions: 120
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)