Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31162
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc...    30   0.37 
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    27   3.4  
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    26   4.5  
SPCC553.07c |mug40||DinB translesion DNA repair polymerase|Schiz...    26   4.5  
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    26   6.0  

>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 585 YIHNCLKNGETPVPGPMQSEDDQGNA 662
           + +NC KNG  P+P P++  +D   A
Sbjct: 643 FFNNCFKNGMLPIPTPIEQVNDMMKA 668


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = -3

Query: 516 EHHRSY--PQYKMP*PHFFHNFVPCPVC 439
           +HH  +  P +  P PHF +N  P P C
Sbjct: 167 QHHHPHTRPPHHPPHPHFHNNNYPPPYC 194


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 339 EIKKSHVDNEAISNDVAAQAHLENYALKL 425
           E +K   ++EA S  + A+ HLE+YA  L
Sbjct: 519 EAEKYKAEDEAESGRIQAKNHLESYAYSL 547


>SPCC553.07c |mug40||DinB translesion DNA repair
           polymerase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 105 KRKCLALIYDLEMANIPDCPMSLKSIQHYLKTAAEH 212
           K +CLA+    +  N   CP+  K+I++ L    +H
Sbjct: 474 KSRCLAMQLKFQSQNTVPCPVCQKNIENELGILNQH 509


>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 333 LEEIKKSHVDNEAISNDVAAQAHLENYALKL 425
           + E +K   ++EA ++ + A+ HLE+YA  L
Sbjct: 517 VSEAEKYKAEDEAETSRIQAKNHLESYAYSL 547


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,800,733
Number of Sequences: 5004
Number of extensions: 56462
Number of successful extensions: 126
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)