Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31162
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    26   0.40 
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    24   1.2  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   2.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.4  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 667  IPALP*SSSDCIGPGTGVSPF 605
            +P+ P +    +GPGTG++PF
Sbjct: 960  MPSEPKAPMILVGPGTGIAPF 980


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +2

Query: 206 RTRQPRCGCSILVSPSRFTNRPENNYQENP*RNQSFNGSY 325
           R+R+P+   S+        N  + NY  N   N ++N +Y
Sbjct: 308 RSREPKIISSLSNKTIHNNNNYKYNYNNNNYNNNNYNNNY 347


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = +1

Query: 424 CFCMLTNRTGNKVMEKMWSRHFILRV*SMMFLPHLV 531
           CF   TNR   K    M S + I       FLP LV
Sbjct: 178 CFPRATNRDIKKCSYNMDSSYVIFSAMGSFFLPMLV 213


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -3

Query: 336 QANP*EPLKLWFLQGFSW 283
           Q NP  PL  W+    SW
Sbjct: 423 QGNPISPLNDWYSLASSW 440


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,297
Number of Sequences: 438
Number of extensions: 3753
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)