Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31160
(659 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ... 29 0.45
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 27 2.4
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 26 4.2
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 26 4.2
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.5
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 7.3
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 25 7.3
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 25 9.7
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 25 9.7
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 25 9.7
>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 29.5 bits (63), Expect = 0.45
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 177 PTTTTFQLLPVSMENSTILHTVALSLDLPVAVSPVKYLMFTLLL 308
P+ T +L ++IL T+ SL + VSP Y +FT LL
Sbjct: 89 PSKKTLVVLGAGWGATSILRTIDTSLFNVIVVSPRNYFLFTSLL 132
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 27.1 bits (57), Expect = 2.4
Identities = 18/61 (29%), Positives = 25/61 (40%)
Frame = -2
Query: 580 SHDAIMTLVLFPAVFFVGHNEFELVEVAVRYTAALNGSSPSEQINKNTLGYYDTLLDNST 401
S+D I L+ F H+E + +Y L E+ +N GYYD D S
Sbjct: 568 SYDEIRPLISILPEFAALHSEEHRMAAFDKYIRRLREKRELEKQYQNRRGYYDVGKDESY 627
Query: 400 L 398
L
Sbjct: 628 L 628
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 26.2 bits (55), Expect = 4.2
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +3
Query: 153 NSALVLFSPTTTT-FQLLPVSMENSTI--LHTVALSLDLPVAVSPVKYLMFTLLLTIPNS 323
N L+ F T T LLP++ I ++TV LSL + S V+ L+F +L +
Sbjct: 290 NLILISFLSTKTDKIVLLPINALKDLIQRVYTVQLSLPVKSVESSVQALLFMVLPHLHTL 349
Query: 324 LRRITTRM 347
+ +T ++
Sbjct: 350 VNELTLKL 357
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 298 VNIRYFTGLTATGRSSDNATVCRIVEFSME 209
+N+ Y + L+ATG S + TV I E + E
Sbjct: 94 INVEYQSNLSATGESVNTTTVSAINEDTRE 123
>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 546
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +1
Query: 187 LPFNCYLFPWRILRSCIPSHYRWIFP 264
LP + + F W +C P H WI P
Sbjct: 426 LPISMFWFAW----TCYPHHIHWIVP 447
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 103 GVLANRHRSTEIASSAAADGSEHSY 29
GV + RSTEIA + + DG+ + Y
Sbjct: 1632 GVYSPYRRSTEIAENMSMDGNAYPY 1656
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/40 (25%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Frame = +2
Query: 524 VTNKENCREQYKGHDRVVTDNKFCAGLV--RLVAATTTIL 637
++N+++ ++YK R++ + +FC ++ +LV +T I+
Sbjct: 13 ISNQQSLDKRYKRIKRLINNEQFCKNVILQKLVDSTKDII 52
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 374 WHVLLVRCSHPCRNSPQRIRDG*QQSEHKIFH 279
W +LLV + C NS +R+G Q +IF+
Sbjct: 1024 WIMLLVHLADLCENSWASVRNGAAQILFRIFN 1055
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = -3
Query: 498 PSDTLPP*TVVPHPSRSTKIPWGITTPCWIIAPCWM 391
PSD T VP + S PW TTP P W+
Sbjct: 21 PSDAQSSPTFVPSANPSLTTPWLQTTPS-ANRPTWL 55
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1317
Score = 25.0 bits (52), Expect = 9.7
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Frame = -2
Query: 487 TAALNGSSPSEQINKNTLGYYDTLLDNSTLLDVWAEVDGM-CYSYDAHIL-VVILLREFG 314
T + G P K GYY+T+ S +D G+ + + I + +L R +
Sbjct: 1118 TFGIGGKDPETGEVKPGFGYYETICGGSGAIDGLDGTSGVHTHMTNTRITDLEVLERRYP 1177
Query: 313 MVNSKVNIRYFTGLTATGRSSDNATVCRIVEF 218
++ K IR +G G+ V R +EF
Sbjct: 1178 VILRKFIIRENSG--GAGKYKGGDGVIRDIEF 1207
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,896,019
Number of Sequences: 5004
Number of extensions: 63729
Number of successful extensions: 205
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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