Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31159
(711 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 29 0.66
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 29 0.66
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 29 0.66
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 29 0.66
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 29 0.66
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 29 0.66
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 29 0.87
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 29 0.87
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 29 0.87
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 29 0.87
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 28 1.5
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ... 26 6.1
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c... 25 8.1
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S... 25 8.1
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 25 8.1
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc... 25 8.1
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 29.1 bits (62), Expect = 0.66
Identities = 22/84 (26%), Positives = 37/84 (44%)
Frame = +3
Query: 213 SAQYTKIHQRYQSFNKHISRATPRNKNY*TLTN*RSYE*SLTNYNLETS*LNQISYYSLT 392
+A Y K H+R+Q NK++ + + KN TN R +L N+ + + + T
Sbjct: 194 TASYGKTHKRFQPQNKNLGKESLSKKN--NTTNSR----NLRKTNVSRIEYSSNKFLNHT 247
Query: 393 RDEQDAISSAGRAHRTCSFPRSLD 464
R + + A CS P +D
Sbjct: 248 RKRYEMVLQAELPDFKCSIPCLID 271
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 29.1 bits (62), Expect = 0.66
Identities = 22/84 (26%), Positives = 37/84 (44%)
Frame = +3
Query: 213 SAQYTKIHQRYQSFNKHISRATPRNKNY*TLTN*RSYE*SLTNYNLETS*LNQISYYSLT 392
+A Y K H+R+Q NK++ + + KN TN R +L N+ + + + T
Sbjct: 194 TASYGKTHKRFQPQNKNLGKESLSKKN--NTTNSR----NLRKTNVSRIEYSSNKFLNHT 247
Query: 393 RDEQDAISSAGRAHRTCSFPRSLD 464
R + + A CS P +D
Sbjct: 248 RKRYEMVLQAELPDFKCSIPCLID 271
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 29.1 bits (62), Expect = 0.66
Identities = 22/84 (26%), Positives = 37/84 (44%)
Frame = +3
Query: 213 SAQYTKIHQRYQSFNKHISRATPRNKNY*TLTN*RSYE*SLTNYNLETS*LNQISYYSLT 392
+A Y K H+R+Q NK++ + + KN TN R +L N+ + + + T
Sbjct: 194 TASYGKTHKRFQPQNKNLGKESLSKKN--NTTNSR----NLRKTNVSRIEYSSNKFLNHT 247
Query: 393 RDEQDAISSAGRAHRTCSFPRSLD 464
R + + A CS P +D
Sbjct: 248 RKRYEMVLQAELPDFKCSIPCLID 271
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 29.1 bits (62), Expect = 0.66
Identities = 22/84 (26%), Positives = 37/84 (44%)
Frame = +3
Query: 213 SAQYTKIHQRYQSFNKHISRATPRNKNY*TLTN*RSYE*SLTNYNLETS*LNQISYYSLT 392
+A Y K H+R+Q NK++ + + KN TN R +L N+ + + + T
Sbjct: 194 TASYGKTHKRFQPQNKNLGKESLSKKN--NTTNSR----NLRKTNVSRIEYSSNKFLNHT 247
Query: 393 RDEQDAISSAGRAHRTCSFPRSLD 464
R + + A CS P +D
Sbjct: 248 RKRYEMVLQAELPDFKCSIPCLID 271
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 29.1 bits (62), Expect = 0.66
Identities = 22/84 (26%), Positives = 37/84 (44%)
Frame = +3
Query: 213 SAQYTKIHQRYQSFNKHISRATPRNKNY*TLTN*RSYE*SLTNYNLETS*LNQISYYSLT 392
+A Y K H+R+Q NK++ + + KN TN R +L N+ + + + T
Sbjct: 194 TASYGKTHKRFQPQNKNLGKESLSKKN--NTTNSR----NLRKTNVSRIEYSSNKFLNHT 247
Query: 393 RDEQDAISSAGRAHRTCSFPRSLD 464
R + + A CS P +D
Sbjct: 248 RKRYEMVLQAELPDFKCSIPCLID 271
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 29.1 bits (62), Expect = 0.66
Identities = 22/84 (26%), Positives = 37/84 (44%)
Frame = +3
Query: 213 SAQYTKIHQRYQSFNKHISRATPRNKNY*TLTN*RSYE*SLTNYNLETS*LNQISYYSLT 392
+A Y K H+R+Q NK++ + + KN TN R +L N+ + + + T
Sbjct: 194 TASYGKTHKRFQPQNKNLGKESLSKKN--NTTNSR----NLRKTNVSRIEYSSNKFLNHT 247
Query: 393 RDEQDAISSAGRAHRTCSFPRSLD 464
R + + A CS P +D
Sbjct: 248 RKRYEMVLQAELPDFKCSIPCLID 271
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 28.7 bits (61), Expect = 0.87
Identities = 22/84 (26%), Positives = 37/84 (44%)
Frame = +3
Query: 213 SAQYTKIHQRYQSFNKHISRATPRNKNY*TLTN*RSYE*SLTNYNLETS*LNQISYYSLT 392
+A Y K H+R+Q NK++ + + KN TN R +L N+ + + + T
Sbjct: 194 TASYGKTHKRFQLQNKNLGKESLSKKN--NTTNSR----NLRKTNVSRIEYSSNKFLNHT 247
Query: 393 RDEQDAISSAGRAHRTCSFPRSLD 464
R + + A CS P +D
Sbjct: 248 RKRYEMVLQAELPDFKCSIPCLID 271
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 28.7 bits (61), Expect = 0.87
Identities = 22/84 (26%), Positives = 37/84 (44%)
Frame = +3
Query: 213 SAQYTKIHQRYQSFNKHISRATPRNKNY*TLTN*RSYE*SLTNYNLETS*LNQISYYSLT 392
+A Y K H+R+Q NK++ + + KN TN R +L N+ + + + T
Sbjct: 194 TASYGKTHKRFQLQNKNLGKESLSKKN--NTTNSR----NLRKTNVSRIEYSSNKFLNHT 247
Query: 393 RDEQDAISSAGRAHRTCSFPRSLD 464
R + + A CS P +D
Sbjct: 248 RKRYEMVLQAELPDFKCSIPCLID 271
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 28.7 bits (61), Expect = 0.87
Identities = 22/84 (26%), Positives = 37/84 (44%)
Frame = +3
Query: 213 SAQYTKIHQRYQSFNKHISRATPRNKNY*TLTN*RSYE*SLTNYNLETS*LNQISYYSLT 392
+A Y K H+R+Q NK++ + + KN TN R +L N+ + + + T
Sbjct: 194 TASYGKTHKRFQLQNKNLGKESLSKKN--NTTNSR----NLRKTNVSRIEYSSNKFLNHT 247
Query: 393 RDEQDAISSAGRAHRTCSFPRSLD 464
R + + A CS P +D
Sbjct: 248 RKRYEMVLQAELPDFKCSIPCLID 271
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 28.7 bits (61), Expect = 0.87
Identities = 22/84 (26%), Positives = 37/84 (44%)
Frame = +3
Query: 213 SAQYTKIHQRYQSFNKHISRATPRNKNY*TLTN*RSYE*SLTNYNLETS*LNQISYYSLT 392
+A Y K H+R+Q NK++ + + KN TN R +L N+ + + + T
Sbjct: 194 TASYGKTHKRFQLQNKNLGKESLSKKN--NTTNSR----NLRKTNVSRIEYSSNKFLNHT 247
Query: 393 RDEQDAISSAGRAHRTCSFPRSLD 464
R + + A CS P +D
Sbjct: 248 RKRYEMVLQAELPDFKCSIPCLID 271
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.5
Identities = 22/84 (26%), Positives = 36/84 (42%)
Frame = +3
Query: 213 SAQYTKIHQRYQSFNKHISRATPRNKNY*TLTN*RSYE*SLTNYNLETS*LNQISYYSLT 392
+A Y K H+R+Q NK++ + KN TN R +L N+ + + + T
Sbjct: 194 TASYGKTHKRFQPQNKNLGKEFLPKKN--NTTNSR----NLRKTNISRIEYSSNKFLNHT 247
Query: 393 RDEQDAISSAGRAHRTCSFPRSLD 464
R + + A CS P +D
Sbjct: 248 RKRYEMVLQAELPDFKCSIPCLID 271
>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 615
Score = 25.8 bits (54), Expect = 6.1
Identities = 7/27 (25%), Positives = 17/27 (62%)
Frame = +1
Query: 586 FNIYLYHLCNIIFFIFYQLHHLSFKIR 666
F +++Y+LC ++ +Y + H + +R
Sbjct: 586 FTMFIYYLCILVLATYYVMKHNFYPLR 612
>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 865
Score = 25.4 bits (53), Expect = 8.1
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 444 SFPRSLDDKGRGVRSALHIVFSHSNCINSTLTKFYRRV 557
SF +S + RGV + LHI+F+ N I TL + R+
Sbjct: 451 SFTKS--SRERGVLNKLHIIFTLDNFIIYTLMAVFWRL 486
>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 25.4 bits (53), Expect = 8.1
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +3
Query: 390 TRDEQDAISSAGRAHRTCSFPRSLDDKGRGV----RSALHIVFSHSNCINSTLTKFYRR 554
+R+ D+IS R FP++ + K R + R +H++ + N I+S + FY R
Sbjct: 185 SREVNDSISQ-----RLKKFPKAANVKLRAICTVPRKIVHVLQKNKNLISSAVNAFYYR 238
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 25.4 bits (53), Expect = 8.1
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = -2
Query: 317 TLVC*-CSIVFVTRRCP--RNVLVETLIALMYFCI 222
TL+C S+V +R P +N + TLIAL+Y C+
Sbjct: 420 TLLCQPISMVLGSRNLPTVKNAAMTTLIALIYACL 454
>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
Sen2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 179 LCYMS*SNIFDISTIYKNTSALSEFQQA 262
LCY+ +I D + I+KN ++++E+ A
Sbjct: 329 LCYVQCPSIEDFNKIWKNQASMNEWDWA 356
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,427,160
Number of Sequences: 5004
Number of extensions: 44631
Number of successful extensions: 99
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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