Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31150
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma...    28   1.2  
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S...    26   4.8  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   8.5  

>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 835

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 537 NQKVKRYHVHGRGGE*NPDLLSVSKQFSVL 448
           N+ +  YHV G GG   PD++S+ +  ++L
Sbjct: 535 NRTIHTYHVEGAGGGHAPDIISLVQNPNIL 564


>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
           Spo6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = -3

Query: 273 DLDVTLVILSRFRYYKTRIIAANSNVISYFDFHHFERSIKTNKLKPISSSTGWLGSMFT 97
           D+  T + +S+ RY++     A  N I YFD  + +  IK    + I++    + ++FT
Sbjct: 106 DIPRTSIRVSKLRYWQRDYRLAFPNFIFYFD--NVDEEIKRRVTQKINNLGAKVATLFT 162


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +1

Query: 577 SNNLLFLKYAASKKIPLII--STGMVDKTAVKTIYDIISSDHKQFCLLHCISAY 732
           SN + F  +  S ++  +I  S G  D      +YDI+ +++   CLL  ISAY
Sbjct: 419 SNTVSFDNFFNSLELIFVIMSSNGFTD-----IMYDIMDAEYFVSCLLFIISAY 467


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,054,775
Number of Sequences: 5004
Number of extensions: 63122
Number of successful extensions: 163
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)