Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31147
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    29   0.83 
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    28   1.1  
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.5  
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   3.4  
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.9  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   7.8  
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom...    25   7.8  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   7.8  

>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 19/79 (24%), Positives = 32/79 (40%)
 Frame = -3

Query: 538 LYGFIINSTLNLCDCFSQYNAITNKLLFNFKTSRVHISVDKMRSFSHISSTLQSELERDN 359
           +Y   +     + D  +QY+ IT + L N  T    +     ++  + +  L   L  D 
Sbjct: 297 IYDEFVKPESPVTDYVTQYSGITEEKLRNVTTVLSDVQSYLKKTVDNNTVLLGHSLNSDL 356

Query: 358 KCLKKVKGKNIDV*NVYTN 302
            CLK      ID  N+Y +
Sbjct: 357 NCLKFTHPHIIDTANIYNH 375


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = -3

Query: 667 CTVPIIIENVRILNHRTMHIALRFKLHRSVHSSGIRERYTQRTLYGFIIN 518
           C  PI  E +     R + ++    LH+  H   IR  Y   T Y  IIN
Sbjct: 269 CNCPICGEYMFNSRERVIFLSCSHPLHQRCHEEYIRTNYRCPTCYKTIIN 318


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +3

Query: 441 LVLKLNKSLFVIALY*EK-QSHKFKVELIMNPYNVLCVYLSRI 566
           L+LK  +  F  +LY +   SH F   L++NP  +LC +++ +
Sbjct: 531 LILKFMQRNFENSLYHQSFSSHWFISRLLINPIRMLCWHITDV 573


>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 127

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 62  FIVKFCYCLKSVVKFRIA*YCLSLTLFVYS 151
           +++ FCYC   +  FR+    +  T+FVYS
Sbjct: 52  YLIYFCYCANFIALFRV----IFGTIFVYS 77


>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 18/68 (26%), Positives = 34/68 (50%)
 Frame = +2

Query: 89  KSVVKFRIA*YCLSLTLFVYSVVLAKPVIIEVLLVFENRTLIMFKIIITIN*SNFDYCGT 268
           K++++  I   C+ + LF+YS+V     + E+  VF ++T      I  I   N    G 
Sbjct: 49  KNIIEI-IGLLCIHVALFIYSIVQISE-LAEIQKVFLSKTQSSLNPITLI--LNRHEAGN 104

Query: 269 TSLFYILQ 292
             +++IL+
Sbjct: 105 EGIYFILE 112


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 403 SHISSTLQSELERDNKCLKKVK 338
           S+ISS+L+SE+E  N  LK  +
Sbjct: 65  SNISSSLRSEMEMSNNLLKNTQ 86


>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 419

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +3

Query: 345 FLRHLLSRSNSLCKVLDICEKLRILSTLICTRLVLKLNK 461
           FLRH+  R+  LC V+DI  K +I +      L  +LNK
Sbjct: 313 FLRHV-ERAKMLCLVIDINPKAKIPADQAFQLLWDELNK 350


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 11/58 (18%)
 Frame = -3

Query: 514  TLNLCDCFSQYN-----AITNK---LLFNFKTSRVHISVDK---MRSFSHISSTLQSE 374
            T N CD FS++N      IT+K   LL +F+  R+ +  +K   +R+FS  +  + +E
Sbjct: 1197 TFNDCDAFSEFNFSLLKDITSKWKDLLESFECRRLKLENNKDEILRNFSEFAKRVNTE 1254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,654,110
Number of Sequences: 5004
Number of extensions: 51291
Number of successful extensions: 104
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)