Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31147
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0356 + 17915029-17916236,17932970-17933283,17933936-179342...    29   3.5  
05_06_0257 + 26723858-26724049,26724073-26724230,26724886-267250...    29   4.6  
02_01_0355 + 2558792-2558862,2558993-2559099,2559185-2559615,256...    29   4.6  

>12_02_0356 +
           17915029-17916236,17932970-17933283,17933936-17934244,
           17934613-17935439
          Length = 885

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -3

Query: 505 LCDCFSQYNAITNKLLFNFKT-SRVHISVDKMRSFSHISSTLQSELERDNKCLKKVKGKN 329
           L   F + +A + K +  FK   + H S++ M  F  I+S       RD+ C  K KGK 
Sbjct: 372 LVSMFEELHAYSEKEIVKFKALKKDHASLEVMSLFRRIAS-------RDDNCSDKQKGKY 424

Query: 328 IDV 320
            D+
Sbjct: 425 DDI 427


>05_06_0257 +
           26723858-26724049,26724073-26724230,26724886-26725024,
           26725130-26725315,26727117-26727310,26728113-26728193,
           26728248-26728338,26728414-26728590
          Length = 405

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 336 PLTFLRHLLSRSNSLCKVLDICEKLRILS 422
           PLT + H  + ++SLCK+++ C  L  L+
Sbjct: 296 PLTSIHHASTYNSSLCKLMEYCPLLTYLA 324


>02_01_0355 +
           2558792-2558862,2558993-2559099,2559185-2559615,
           2560100-2560735
          Length = 414

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -3

Query: 505 LCDCFSQYNAITNKLLFNFKTSRVHISVDKMRSFSHISSTLQSELERDNK 356
           LCD +    AIT  ++F     +V    DKMRS  H  S    +++++ +
Sbjct: 271 LCDLYETL-AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTR 319


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,856,426
Number of Sequences: 37544
Number of extensions: 250955
Number of successful extensions: 437
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)