Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31147
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    23   2.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.7  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   8.3  

>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 548 CVSLTYSTRMNASVKLEPQSYVH 616
           C + TY+T+   S+KL  + Y H
Sbjct: 47  CANCTYATKYCHSLKLHLRKYSH 69


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 571 SGIRERYTQRTLYGFIINST 512
           S +RE Y Q  L GFI N T
Sbjct: 866 SHLRELYLQNNLIGFIGNLT 885


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -1

Query: 195 KTNNTSIITGFAKTTL*TNNVKDKQY*AILNL 100
           ++    II+  +  T+  NN   K Y  I+N+
Sbjct: 308 RSREPKIISSLSNNTIHNNNYNKKLYYNIINI 339


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,419
Number of Sequences: 438
Number of extensions: 3532
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)