Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31143
         (390 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    25   0.41 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   2.2  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   2.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   2.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   3.8  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   3.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   3.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   3.8  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   3.8  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   5.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   6.6  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    20   8.7  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    20   8.7  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    20   8.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    20   8.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   8.7  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             20   8.7  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 24.6 bits (51), Expect = 0.41
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 38  NTSKWLIEEQNYASTSSERTARPKCRRRFS 127
           +T +WL+ E+    TSS  +  P  +  +S
Sbjct: 72  STGEWLLTEEKLPKTSSNASVEPDSKVTYS 101


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 9/33 (27%), Positives = 14/33 (42%)
 Frame = -3

Query: 202 IEGGM*TPFICSTCWYEGTRVRYWARKPSAAFW 104
           + GGM    +C     E  +VR++  K     W
Sbjct: 235 VAGGMEMILLCEKVAKEDIQVRFFEEKDGQVLW 267


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 9/33 (27%), Positives = 14/33 (42%)
 Frame = -3

Query: 202 IEGGM*TPFICSTCWYEGTRVRYWARKPSAAFW 104
           + GGM    +C     E  +VR++  K     W
Sbjct: 235 VAGGMEMILLCEKVAKEDIQVRFFEEKDGQVLW 267


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 298  PPNRSRYLLPSLSYNHC 248
            PPNR    +P  +YN C
Sbjct: 1648 PPNRKLPPVPGSNYNTC 1664


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 218 EAGASHPGAHAVVIRQRRQEIPGSVRWN 301
           +  AS PG   +V      E+PGS  W+
Sbjct: 403 DVAASGPGLAFLVYPSAVLELPGSSIWS 430


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 9   VTYCNRLNRETHRNG 53
           VT C   N ET+R G
Sbjct: 562 VTKCKATNEETYRGG 576


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 9   VTYCNRLNRETHRNG 53
           VT C   N ET+R G
Sbjct: 562 VTKCKATNEETYRGG 576


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 9   VTYCNRLNRETHRNG 53
           VT C   N ET+R G
Sbjct: 562 VTKCKATNEETYRGG 576


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 104 PKCRRRFSC 130
           P CRR FSC
Sbjct: 9   PYCRRNFSC 17


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 8/27 (29%), Positives = 11/27 (40%)
 Frame = -2

Query: 380 RMPQYIELIFEGCIYFRMTMAHGDGDD 300
           R P Y  +      Y++    HG G D
Sbjct: 79  RFPPYNRMDMRNATYYQHQQDHGSGMD 105


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -2

Query: 236 GEKHRLLIG 210
           G+KH+LLIG
Sbjct: 184 GQKHKLLIG 192


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 180 LSFVLLVGTKVPVYGTGHENRRRHFG 103
           +S  +L+   +P    GH  RR  FG
Sbjct: 77  ISPAMLLDNGIPWVILGHSERRNIFG 102


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = -3

Query: 181 PFICSTCWYEGTRVRYWAR 125
           P +  T   +GT+ ++W+R
Sbjct: 7   PMMSVTAIIQGTQAQHWSR 25


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = -3

Query: 181 PFICSTCWYEGTRVRYWAR 125
           P +  T   +GT+ ++W+R
Sbjct: 7   PMMSVTAIIQGTQAQHWSR 25


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 315 VGHCHPKVNAALKDQL 362
           + + HPK  A L DQ+
Sbjct: 199 IDYVHPKDKATLADQI 214


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 12/45 (26%), Positives = 18/45 (40%)
 Frame = +2

Query: 68  NYASTSSERTARPKCRRRFSCPVPYTGTFVPTSRTNERSLHAAFN 202
           NY+  +    A     +R    VP      PT  + ER+ H A +
Sbjct: 682 NYSCVARNLAAEVSHTQRLVVHVPPRWIVEPTDVSVERNKHVALH 726


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 315 VGHCHPKVNAALKDQL 362
           + + HPK  A L DQ+
Sbjct: 194 IDYVHPKDKATLADQI 209


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,550
Number of Sequences: 438
Number of extensions: 2835
Number of successful extensions: 17
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)