Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31140
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    28   1.2  
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    26   6.4  
SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces pom...    22   8.7  

>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = +1

Query: 34   LIGICYVLHKATLRLSLHCMKALVMCSRIIVVGKSSFIKNQLQINSRQSL*QNHYRGY 207
            LI  C++L   +L       KAL   S+ +     SFI +QLQ + ++   Q H  GY
Sbjct: 1656 LIDTCHILRSRSLESRDATRKALAAISKFLGPKYFSFIISQLQTSLKRGY-QLHVLGY 1712


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 408 FVKRYYVRLEGNVLRR*HVNNVI 340
           FV+R Y+ L     RR H+NN++
Sbjct: 626 FVRRTYIPLPDETTRRLHLNNLL 648


>SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 22.2 bits (45), Expect(2) = 8.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 52  VLHKATLRLSLHCMKALVMCSRIIVVGKSSFIKN 153
           +L K TLR SL C+ AL +     V G S  ++N
Sbjct: 42  ILSKKTLRESLSCVLALPLDH---VTGSSESMEN 72



 Score = 21.4 bits (43), Expect(2) = 8.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 196 YRGYK*YILYKIYSWLWSHDSK 261
           +RG+    LY+I   LWS   K
Sbjct: 113 FRGFHALQLYRIAHGLWSEGDK 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,974,304
Number of Sequences: 5004
Number of extensions: 61371
Number of successful extensions: 129
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)