Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31140
         (732 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0800 + 21330446-21330722,21331040-21331182,21331925-213319...    28   8.8  
03_05_1104 + 30431833-30432143,30432789-30432862,30432949-304330...    28   8.8  

>08_02_0800 +
           21330446-21330722,21331040-21331182,21331925-21331978,
           21332065-21332130,21333075-21333096,21333347-21333460,
           21334153-21334278,21334891-21334925,21335709-21335809,
           21335911-21335971,21336482-21336572,21337657-21337842,
           21338755-21338922,21339006-21339208,21339313-21339431,
           21339910-21339928,21340092-21340130,21340238-21340465,
           21340987-21341088,21341842-21341889,21343622-21343765,
           21343873-21343968,21344224-21344325,21345188-21345274
          Length = 876

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +1

Query: 37  IGICYVLHKATLRLSLHCMKALVMCSRIIVVGKSSFIKNQLQINSRQSL*QNHYRG 204
           IG   V+H+   +LS   M  L++CS    V KS  + N   +    ++  NH+ G
Sbjct: 598 IGDKNVVHRRARKLSFLTMILLLICSPAASVEKSELVTNSTPV----TIDSNHFHG 649


>03_05_1104 +
           30431833-30432143,30432789-30432862,30432949-30433067,
           30434462-30434526,30434962-30435310
          Length = 305

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +3

Query: 276 KFCHKNH-KSTVCKTDDNNNICLLHC*HVIFSKHFL 380
           K C K+H K  +CK  D   +C      ++  KHFL
Sbjct: 245 KTCFKHHPKGQMCKHSDTALLCSFCILDILMMKHFL 280


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,103,531
Number of Sequences: 37544
Number of extensions: 315533
Number of successful extensions: 497
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)