Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31137
         (497 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    27   1.6  
SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   4.8  
SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces po...    25   8.4  
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    25   8.4  
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun...    25   8.4  

>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
 Frame = +3

Query: 213 LYLLAELKT-ISLKV-TTVDMQXPPPDXRTNFEATHPPILIDNGLAILENEKIERHIMK 383
           +++L ELK    +KV   VD + PP   + +      PI++D+G+  +E+  I  H+++
Sbjct: 16  VWMLEELKVPYEIKVYDRVDGRAPPAYTKLS-PLGKSPIVVDDGVTYIESAAILEHLVR 73


>SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 434 DATSLSCKNEVVSPWHGLHD 375
           D TS +C+  +  PW G+ D
Sbjct: 262 DPTSFTCRLPLPEPWRGIRD 281


>SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 439

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +3

Query: 279 PPDXRTNFEATHP 317
           PPD R NFE T P
Sbjct: 98  PPDHRPNFELTEP 110


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 109 QLMETFRRSSL**XHRXSMEDXRAPVCSVRN 201
           + + T +R SL   HR S+ED R+P    +N
Sbjct: 752 KFLNTSKRVSLENFHRLSVEDLRSPSFVYKN 782


>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
           Taf7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 240 ISLKVTTVDMQXPPPDXRTNFEATHPP 320
           + LK+  V  Q PP D R++  AT PP
Sbjct: 2   VKLKIRAV--QPPPNDSRSSTPATGPP 26


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,960,125
Number of Sequences: 5004
Number of extensions: 35881
Number of successful extensions: 98
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)