Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31137
         (497 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0595 - 4430738-4430785,4430904-4432679                           29   2.7  
06_03_1516 + 30712208-30712780,30712984-30713139,30713819-307139...    27   6.3  
12_02_0957 + 24807261-24807311,24807436-24807773,24808727-248089...    27   8.4  

>01_01_0595 - 4430738-4430785,4430904-4432679
          Length = 607

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = -2

Query: 448 GSRLETRPLCPARMRLCPP 392
           GS L   P  PAR RLCPP
Sbjct: 24  GSSLGMAPCLPARKRLCPP 42


>06_03_1516 +
           30712208-30712780,30712984-30713139,30713819-30713985,
           30714108-30714357,30714400-30715182,30715437-30715753,
           30715775-30716036
          Length = 835

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = -1

Query: 458 FEYRFSIRDATSLSCKNEVVSP--WHGLHDVPFDFLVLKYRQPIIDQYGRVCRFEVGAXI 285
           F  RF   D TS SC+N   +   W    D P DF         +  +G+V + ++   +
Sbjct: 478 FMLRFVPHDLTS-SCRNSPFTSEGWIMFLDFPLDFKTPAIIDKAVSLFGKVIKVQLDDNV 536

Query: 284 WGRXL 270
            GR +
Sbjct: 537 RGRLM 541


>12_02_0957 +
           24807261-24807311,24807436-24807773,24808727-24808927,
           24809024-24809069,24809284-24809600,24809949-24810072,
           24810465-24810537,24810968-24811173,24811384-24811651,
           24811780-24811877,24812116-24812379
          Length = 661

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 126 PEIELIIXASTIDGRXKGACLFCQEYFMDLYLLAELKTISL 248
           P+I L I A        G+ +FC++Y +  YLL + +TI L
Sbjct: 433 PQIPLYITAMDKTSVASGSLVFCKDYAV-RYLLDQNRTIKL 472


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,492,807
Number of Sequences: 37544
Number of extensions: 262939
Number of successful extensions: 550
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)