Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31135
(705 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1269 + 35352825-35352888,35353645-35353968,35355062-353551... 31 0.89
06_01_0785 - 5873244-5873357,5873458-5873562,5874333-5874424,587... 30 1.6
08_02_0717 + 20372728-20372836,20372936-20373078,20374131-203742... 29 2.7
06_01_0786 - 5881178-5881303,5881523-5881627,5882078-5882169,588... 29 4.8
05_01_0468 + 3715777-3715810,3716485-3716528,3716572-3716960,371... 28 6.3
10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396 28 8.3
02_05_0420 + 28821717-28821854,28821944-28822210,28822299-288225... 28 8.3
02_02_0537 + 11308195-11309667 28 8.3
01_05_0645 - 23899579-23904483 28 8.3
>02_05_1269 +
35352825-35352888,35353645-35353968,35355062-35355183,
35355361-35355482,35355651-35355755,35356402-35356765,
35357181-35357321,35357619-35359109
Length = 910
Score = 31.1 bits (67), Expect = 0.89
Identities = 20/73 (27%), Positives = 37/73 (50%)
Frame = +1
Query: 16 LREEQPFRLWVLKHGQLMTSSEVSAGWSHSASSLICSTPYGTHTLSHWARAALTPRLRFL 195
L+ ++W + G L+ + EV+ G + + SS +TP + S ++R+ +PR+ L
Sbjct: 226 LKASPSCKIWFVCKGNLICTREVNEGLNRTGSSTTSTTP--RSSTSDYSRSRSSPRVHSL 283
Query: 196 YIH*E*GRQDHVE 234
+ G QD E
Sbjct: 284 SSE-QFGMQDPAE 295
>06_01_0785 -
5873244-5873357,5873458-5873562,5874333-5874424,
5874525-5874594,5875080-5875202,5875287-5875372,
5875547-5875648,5875874-5876096,5876217-5876282,
5876407-5876497,5876574-5876701,5877734-5877749,
5878171-5878318,5878440-5878511,5878586-5878690,
5879122-5879291,5880093-5880424
Length = 680
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +3
Query: 126 YPVWYPHSVTLGEGRSHSAPPVFIYTLGVGQTRPCGKLDALIQFWVIFGYS 278
Y +YP S +G PP+ + T G G LD +Q+W G++
Sbjct: 424 YAYFYPPSNPNFQGLPDEKPPLLVKTHGGPTAETRGILDLSVQYWTSRGWA 474
>08_02_0717 +
20372728-20372836,20372936-20373078,20374131-20374211,
20374307-20374510,20374789-20374796,20375153-20375245,
20375377-20375500,20375585-20375650,20375841-20375907,
20376600-20376676,20377032-20377145,20377546-20377623,
20377705-20377856,20377960-20378020,20378292-20378398,
20378497-20378562,20379099-20379177,20379671-20379967
Length = 641
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Frame = +3
Query: 84 FGWLVAFSIQPHLL-YPVWYPHSVTLGEGRSHSAPPVFIYTLGVGQTRPCGKLDALIQFW 260
+GW + +SI+P L+ YP + V+ G ++ P ++ G+L L W
Sbjct: 515 WGWEILYSIKPELIDYPSSFKSPVSSGT-KTVLLPEARARVFKSNYSQSLGELKILRSSW 573
Query: 261 VIFGYSCS-ENKTREFFVLLYLIQF 332
++ +S S + F++L++ + F
Sbjct: 574 LVASFSESGKAGFSSFWLLVHFLDF 598
>06_01_0786 -
5881178-5881303,5881523-5881627,5882078-5882169,
5882267-5882336,5882639-5882724,5882916-5883017,
5883375-5883597,5883693-5883758,5883896-5883986,
5884019-5884057,5885401-5885548,5885623-5885715,
5885782-5885886,5886645-5886826,5886912-5887084
Length = 566
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 126 YPVWY-PHSVTLGEGRSHSAPPVFIYTLGVGQTRPCGKLDALIQFWVIFGYS 278
Y +Y PH+ + +G S PP+ + T G G LD +Q+W G++
Sbjct: 347 YAYFYAPHN-HIFQGSSDEKPPLLVRTHGGPTDEARGVLDLGVQYWTSRGWA 397
>05_01_0468 +
3715777-3715810,3716485-3716528,3716572-3716960,
3717081-3717330,3717614-3717619
Length = 240
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +1
Query: 367 QASKWFTIISCLHEYLYYHSVKLFILENKTRN-FNIVIFNQIYKEILLHLTILHRHPN 537
+ ++ I++C H + Y++S ++ + +K + FNI+I Q Y+ ++ HPN
Sbjct: 70 EVENFYYILTCAHLFEYFYSAEIKVDCDKLNSWFNILIICQHYES-----DMIANHPN 122
>10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396
Length = 1357
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 517 ILHRHPNGLPTLQ*RLTQPVLNCLFCCYRNT 609
ILH HPN TQP C C Y+++
Sbjct: 1015 ILHNHPNSFLPQYILRTQPKAPCRSCAYKDS 1045
>02_05_0420 +
28821717-28821854,28821944-28822210,28822299-28822568,
28822656-28823246,28823336-28823479
Length = 469
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +3
Query: 132 VW-YPHSVTLGEGRSHSAPPVFIYTLGVGQTRPCGKLDALIQFWVIFG 272
+W YP V + E H++ +F+ G T D ++FW +FG
Sbjct: 398 LWKYPSMVKMAELTGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG 445
>02_02_0537 + 11308195-11309667
Length = 490
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 517 ILHRHPNGLPTLQ*RLTQPVLNCLFCCYRNT 609
ILH HPN TQP C C Y+++
Sbjct: 173 ILHNHPNSFLPQYILRTQPKAPCRSCAYKDS 203
>01_05_0645 - 23899579-23904483
Length = 1634
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 517 ILHRHPNGLPTLQ*RLTQPVLNCLFCCYRNT 609
ILH HPN TQP C C Y+++
Sbjct: 1292 ILHNHPNSFLPQYILRTQPKAPCRSCAYKDS 1322
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,835,633
Number of Sequences: 37544
Number of extensions: 420235
Number of successful extensions: 947
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -