Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31135
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41010-5|AAV28334.1|  975|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U41010-4|AAV28333.1| 1622|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U58760-4|AAK31462.2|  678|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class glut...    28   7.5  
AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type ion...    28   7.5  
Z49908-8|CAA90098.1|  153|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z47811-1|CAA87785.3|  201|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U41552-3|AAC69100.2|  303|Caenorhabditis elegans Dauer or aging ...    27   9.9  

>U41010-5|AAV28334.1|  975|Caenorhabditis elegans Hypothetical protein
            T05A12.4b protein.
          Length = 975

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -2

Query: 194  KNRRRGVRAALAQCDRVWVPYGVEQMRLDAECDQPAETSELVMS*PCFSTQ 42
            K+ R G R    + + +  P   ++ RLD E +   ET+E   + PC STQ
Sbjct: 854  KSERNG-RVNEREIEEITRPKDAKRSRLDVEEEDEMETNEEKSNTPCSSTQ 903


>U41010-4|AAV28333.1| 1622|Caenorhabditis elegans Hypothetical protein
            T05A12.4a protein.
          Length = 1622

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -2

Query: 194  KNRRRGVRAALAQCDRVWVPYGVEQMRLDAECDQPAETSELVMS*PCFSTQ 42
            K+ R G R    + + +  P   ++ RLD E +   ET+E   + PC STQ
Sbjct: 854  KSERNG-RVNEREIEEITRPKDAKRSRLDVEEEDEMETNEEKSNTPCSSTQ 903


>U58760-4|AAK31462.2|  678|Caenorhabditis elegans Hypothetical
           protein C27A2.4 protein.
          Length = 678

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +1

Query: 364 SQASKWFTIISCLHEYLYYHSVKLFILENKTRNFNIVIFNQIYKEI-LLHLTILHRH 531
           S  + +F  I+C HE  YY  + LF++ N    F I I   + +E+ L+ +  + RH
Sbjct: 343 SDRTPYFRKIACFHEMSYYVLIALFLVGN---IFTIEINETVPEELQLIFVHTVWRH 396


>U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class
           glutamate receptor protein1 protein.
          Length = 1025

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 180 APPVFIYTLGVGQTRPCGKLDALIQFWVIF 269
           A P F+YT  +G    C +L   +  W IF
Sbjct: 403 ADPPFVYTTPIGSPSQCAELGNTVVEWSIF 432


>AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type
           ionotropic glutamatereceptor NMR-1 protein.
          Length = 1025

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 180 APPVFIYTLGVGQTRPCGKLDALIQFWVIF 269
           A P F+YT  +G    C +L   +  W IF
Sbjct: 403 ADPPFVYTTPIGSPSQCAELGNTVVEWSIF 432


>Z49908-8|CAA90098.1|  153|Caenorhabditis elegans Hypothetical
           protein C07E3.9 protein.
          Length = 153

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 230 TWSCLPYS*CIYKNRRRGVRAALAQCDRVWV 138
           +WSC+  S  I  ++  G +AAL  CD++ V
Sbjct: 95  SWSCMN-STAICSDKNMGCKAALCDCDKIVV 124


>Z47811-1|CAA87785.3|  201|Caenorhabditis elegans Hypothetical
           protein K02C4.2 protein.
          Length = 201

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 221 CLPYS*CIYKNRRRGVRAALAQCDRVWVPYG 129
           C PY  C+   R+  V   LA+C++++   G
Sbjct: 24  CKPYEKCLKAARKEPVEKCLAKCEKIFPTCG 54


>U41552-3|AAC69100.2|  303|Caenorhabditis elegans Dauer or aging
           adult overexpressionprotein 3 protein.
          Length = 303

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 270 QKLPKTESEHPTFHMVLS 217
           QK+ KT   HP FH VL+
Sbjct: 21  QKIAKTREHHPNFHAVLA 38


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,393,637
Number of Sequences: 27780
Number of extensions: 384258
Number of successful extensions: 875
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)