Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31135
         (705 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    27   0.23 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.70 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.70 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.6  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   1.6  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.8  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    22   6.5  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   8.6  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   8.6  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   8.6  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   8.6  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 87  GWLVAFSIQPHLLYPVWYPH 146
           G+L+A  +QP L++ +W PH
Sbjct: 162 GFLLAGIVQPFLIHWIWTPH 181


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 99   AFSIQPHLLYPVWYPHSVTLGEGRS 173
            A  +Q H+ Y  W   S  +GEG+S
Sbjct: 1276 ATDLQQHVEYQFWVTGSTRVGEGQS 1300



 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/34 (29%), Positives = 12/34 (35%)
 Frame = +1

Query: 55   HGQLMTSSEVSAGWSHSASSLICSTPYGTHTLSH 156
            HG L          SH    L+C   Y  +  SH
Sbjct: 1445 HGNLDELQLSRHATSHELKGLLCGNTYQLYLTSH 1478


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 99   AFSIQPHLLYPVWYPHSVTLGEGRS 173
            A  +Q H+ Y  W   S  +GEG+S
Sbjct: 1272 ATDLQQHVEYQFWVTGSTRVGEGQS 1296



 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/34 (29%), Positives = 12/34 (35%)
 Frame = +1

Query: 55   HGQLMTSSEVSAGWSHSASSLICSTPYGTHTLSH 156
            HG L          SH    L+C   Y  +  SH
Sbjct: 1441 HGNLDELQLSRHATSHELKGLLCGNTYQLYLTSH 1474


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -1

Query: 351 CNKIYL*IGLNITIQKTLVFYS 286
           C++ YL I  NIT+++  +FY+
Sbjct: 227 CDEPYLDITFNITMRRKTLFYT 248


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -1

Query: 351 CNKIYL*IGLNITIQKTLVFYS 286
           C++ YL I  NIT+++  +FY+
Sbjct: 227 CDEPYLDITFNITMRRKTLFYT 248


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -1

Query: 351 CNKIYL*IGLNITIQKTLVFYS 286
           C++ YL I  NIT+++  +FY+
Sbjct: 223 CDEPYLDITFNITMRRKTLFYT 244


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -1

Query: 321 NITIQKTLVFYSHYMNIQKLPKTESEHPTFHMVLSALLLMY 199
           N+T+     + S+Y  I  L    +  PT+   L    LMY
Sbjct: 628 NVTLSTKCPYPSYYSYIGVLTLVATSMPTYICYLGKAYLMY 668


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 356 LNAIKSIYKLD*I*QYKKLSCF 291
           L+ +KS+Y+ +   Q KKL CF
Sbjct: 34  LSDLKSMYESNSEEQMKKLGCF 55


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -2

Query: 227 WSCLPYS*CIYKNRRRGVRAALAQCDRVWV 138
           WS   Y  C         + A+ +CDR+WV
Sbjct: 110 WSFAKYDDC--SGIVSASKLAIDKCDRLWV 137


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -2

Query: 227 WSCLPYS*CIYKNRRRGVRAALAQCDRVWV 138
           WS   Y  C         + A+ +CDR+WV
Sbjct: 110 WSFAKYDDC--SGIVSASKLAIDKCDRLWV 137


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -2

Query: 227 WSCLPYS*CIYKNRRRGVRAALAQCDRVWV 138
           WS   Y  C         + A+ +CDR+WV
Sbjct: 110 WSFAKYDDC--SGIVSASKLAIDKCDRLWV 137


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -2

Query: 188 RRRGVRAALAQCDRVWVPYGVEQMRLDA 105
           R   VR  +    + W+  G++  R+DA
Sbjct: 204 RNSDVREEMKNIMKFWLDKGIDGFRIDA 231


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,402
Number of Sequences: 438
Number of extensions: 4825
Number of successful extensions: 25
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)