Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31134
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...   236   3e-63
SPCC1620.13 |||phosphoglycerate mutase family|Schizosaccharomyce...    28   1.2  
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    27   2.8  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    25   8.5  

>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score =  236 bits (577), Expect = 3e-63
 Identities = 111/243 (45%), Positives = 151/243 (62%)
 Frame = +3

Query: 3   KTVFVAFFQGEQLKSRIKKVCTGFHASLYPCPPSNTERQDMVKGVRTRLEDLNMVLNQTR 182
           KT+F+    G Q+  RI+K+     A+L+P       R   ++     + DLN VL  TR
Sbjct: 221 KTIFLVIAHGTQILLRIRKISESLGATLFPVEEDAPGRTSQIQQANVSISDLNAVLENTR 280

Query: 183 DHRQRVLASVAKELTSWTIMVRKMKAIYHTLNLFNMDVTKKCLIGECWVPTADLPNVQKA 362
                 L  +A+ +++W  ++ K K ++  +NLFN D   KCLI E W PTA+LP VQK 
Sbjct: 281 SALYTELTFIAEHISAWEAVLHKDKTVFQVMNLFNYDQNHKCLIAEGWCPTANLPMVQKT 340

Query: 363 LADGSNACGSSIPSFLNCIETDEEPPTFNRTNKFTRGFQNLIDAYGVASYRECNPALYTI 542
           L + S+   S  P+ LN + T E+PPT+ R NKFT GFQ++ID+YG+A+YRE N  +  I
Sbjct: 341 LRNISDLTDSQAPTILNVVHTSEQPPTYFRVNKFTEGFQSIIDSYGIATYREVNHGIVAI 400

Query: 543 ITFPFLFAVMFGDLGHGCIMAMFGGWMVVKEVSLAAKKSNNEIWNIFFAGRYIILLMGCF 722
           +TFPFLFA+MFGDLGHG IMA      V+ E +L AKK  +EI  + F GRYI+LLMG F
Sbjct: 401 VTFPFLFAIMFGDLGHGAIMASVALMFVLYEKTLGAKKDLDEIVGMVFYGRYIVLLMGLF 460

Query: 723 SMY 731
           SMY
Sbjct: 461 SMY 463


>SPCC1620.13 |||phosphoglycerate mutase family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 282

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 1/100 (1%)
 Frame = -1

Query: 644 ERDFLHDHPAAEHRHDAAVTKVAEHHSEQERE-RYDRVQSRVTFAVGGDSVSVDEVLEAA 468
           +  F  D  +   ++D+  T +   H+E E   R  R  +R+      DS         A
Sbjct: 36  DNSFQTDISSTSSQNDSKFTCLLVRHAESEHNVRGIRAGARI------DSELTVHGYNQA 89

Query: 467 RELVGPVEGGRLLVSLDAVQERRDRTAARVRTISQCLLYI 348
           ++L   +    ++    + Q+R  RTA  +  ++ C LYI
Sbjct: 90  KKLAKSIRNLDIVCVYSSPQKRAKRTAEEITKVANCPLYI 129


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +1

Query: 106 IPNDRTWSRESGPDSKTLTWS*TKPATTG 192
           +PN  T S +SGPDS T TW    P ++G
Sbjct: 526 LPNLSTLSLQSGPDS-TATWHPEFPNSSG 553


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 256 FIFLTIMVQLVSSLATLASTRCLWSRVWFKTMLRSSS 146
           F F   MV L  +   ++   CL+ R+W +  L +SS
Sbjct: 427 FFFADQMVSLTYACGNISLFFCLYKRLWRQPQLCNSS 463


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,949,199
Number of Sequences: 5004
Number of extensions: 60356
Number of successful extensions: 164
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)