Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31134
         (734 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.98 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.7  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    24   1.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.9  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 0.98
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = -1

Query: 623 HPAAEHRHDAAVTKVAEHHS--EQERERYDRVQSR 525
           H    H H    T V +HH   +Q++++  R Q R
Sbjct: 142 HHLQNHHHHLQSTAVQDHHRPYQQQQQQQQRQQQR 176


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 248  PHHYGPAGQLLSNTCKHTLPVVAGLVQDH 162
            P H+  +  L+SN C+     VA  +QDH
Sbjct: 1620 PEHFVASYALISNQCEGDSLNVAKSLQDH 1648


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +3

Query: 510 YRECNPALYTIITFPFLFAVMFGDLGHGCIMAMF 611
           Y E NP+L+ ++   ++       LG+G ++ +F
Sbjct: 40  YPEPNPSLHYLLALLYILFTFLALLGNGLVIWIF 73


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +3

Query: 117 QDMVKGVRTRLEDLNMVLN 173
           +D+ KG+ TRLE L +VLN
Sbjct: 298 RDLPKGIFTRLEQL-LVLN 315



 Score = 22.6 bits (46), Expect = 3.9
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -1

Query: 683  EYIPDFVVRFLGGERDFLHDHPAAEHRHDAAVTKVAEHHSE 561
            E + D  V +   + DF+    A E  H AA  ++  HH +
Sbjct: 1063 ERLYDCYVCYSPNDEDFVLHSLAVELEHGAAGLRLCLHHRD 1103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,587
Number of Sequences: 438
Number of extensions: 4636
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)