Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31132
         (320 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    57   8e-10
SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase Agn1|Schizo...    24   5.0  
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    24   5.0  
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom...    23   8.7  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 56.8 bits (131), Expect = 8e-10
 Identities = 24/36 (66%), Positives = 28/36 (77%)
 Frame = +3

Query: 6   ILKIQFFTIFIGVNITFFPQHFLGLAGIPRRYSDYP 113
           +  IQF+ +FIGVNI F PQHFLGL G+PRR  DYP
Sbjct: 415 LASIQFWILFIGVNIVFGPQHFLGLNGMPRRIPDYP 450


>SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase
           Agn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +3

Query: 24  FTIFIGVNITFFPQHFLGLAGIPRRYSDYPGLIYF 128
           F +FI  +++        + G+ RR++D P  +Y+
Sbjct: 84  FKLFISFDMSIISADADFIEGVVRRFADKPNQLYY 118


>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 5   YTKNSIFYNIYWSKYNIFSTTFFR 76
           YT  S F    W  Y+IF + FF+
Sbjct: 256 YTAGSWFMLFIWIVYSIFLSIFFK 279


>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 83  WNTSTIFRLSRTHIFHEI 136
           WN  + FR+   H FH++
Sbjct: 195 WNQLSFFRVKPGHSFHDV 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,092,068
Number of Sequences: 5004
Number of extensions: 15934
Number of successful extensions: 39
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)