Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31119
(590 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 200 9e-53
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 200 9e-53
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 81 1e-16
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 80 2e-16
SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 36 0.004
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 32 0.054
SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce... 31 0.095
SPBC3B9.21 |dcp1||mRNA decapping complex subunit Dcp1|Schizosacc... 27 1.5
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha... 26 4.7
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|... 25 6.2
SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces... 25 6.2
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 25 6.2
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 25 6.2
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 25 8.3
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 25 8.3
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 200 bits (489), Expect = 9e-53
Identities = 92/168 (54%), Positives = 126/168 (75%), Gaps = 4/168 (2%)
Frame = +2
Query: 47 YQTFQRIVENVNVIIATYNDDGGPMGEVRVDPSXGSVGFGSGLHGWAFTLKQFSEMYADK 226
YQ F R+VE+VNV+I+TY D +G+ +V P G+V F SGLHGWAFT++QF+ YA K
Sbjct: 175 YQNFARVVESVNVVISTYYDK--VLGDCQVFPDKGTVAFASGLHGWAFTVRQFANRYAKK 232
Query: 227 FKIDLVKLMNRLWGENFFNPQTTKWSKQKAD----DNKRSFCMYVLDPIYKVFDAIMKFK 394
F ID K+M RLWGEN+FNP+T KWSK D N+R+F M++LDPIY++FDA+M +
Sbjct: 233 FGIDRNKMMQRLWGENYFNPKTKKWSKSATDANGNSNQRAFNMFILDPIYRIFDAVMNSR 292
Query: 395 KEEIDDLLKKIGVTIKHEDSDKDGKALLKVVMRSWLPAGEALLQMIAI 538
K+E+ LL K+ VTIK ++ + +GKALLKVVMR +LPA +AL++MI +
Sbjct: 293 KDEVFTLLSKLEVTIKPDEKELEGKALLKVVMRKFLPAADALMEMIVL 340
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 200 bits (489), Expect = 9e-53
Identities = 92/168 (54%), Positives = 126/168 (75%), Gaps = 4/168 (2%)
Frame = +2
Query: 47 YQTFQRIVENVNVIIATYNDDGGPMGEVRVDPSXGSVGFGSGLHGWAFTLKQFSEMYADK 226
YQ F R+VE+VNV+I+TY D +G+ +V P G+V F SGLHGWAFT++QF+ YA K
Sbjct: 175 YQNFARVVESVNVVISTYYDK--VLGDCQVFPDKGTVAFASGLHGWAFTVRQFANRYAKK 232
Query: 227 FKIDLVKLMNRLWGENFFNPQTTKWSKQKAD----DNKRSFCMYVLDPIYKVFDAIMKFK 394
F ID K+M RLWGEN+FNP+T KWSK D N+R+F M++LDPIY++FDA+M +
Sbjct: 233 FGIDRNKMMQRLWGENYFNPKTKKWSKSATDANGNSNQRAFNMFILDPIYRIFDAVMNSR 292
Query: 395 KEEIDDLLKKIGVTIKHEDSDKDGKALLKVVMRSWLPAGEALLQMIAI 538
K+E+ LL K+ VTIK ++ + +GKALLKVVMR +LPA +AL++MI +
Sbjct: 293 KDEVFTLLSKLEVTIKPDEKELEGKALLKVVMRKFLPAADALMEMIVL 340
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 81.0 bits (191), Expect = 1e-16
Identities = 51/169 (30%), Positives = 82/169 (48%), Gaps = 15/169 (8%)
Frame = +2
Query: 62 RIVENVNVIIATY----------NDDGGPMGEVRVDPSXGSVGFGSGLHGWAFTLKQFSE 211
R+VE VN +I T+ ND+ + P G+V F S GWAF L QFSE
Sbjct: 176 RLVEQVNAVIGTFYTGELMQLADNDEVISDEGIYFAPEQGNVVFASAYDGWAFCLDQFSE 235
Query: 212 MYADKFKIDLVKLMNRLWGENFFNPQTTKWSKQKADDNKR---SFCMYVLDPIYKVFD-A 379
Y K + L LWG+ + +P+T + + K +R F +VL+ ++ V++ A
Sbjct: 236 FYEKKLGLKQKALTKCLWGDYYLDPKTKRVLQPKHLQGRRLKPMFVQFVLENLWAVYESA 295
Query: 380 IMKFKKEEIDDLLKKIGVTIKHED-SDKDGKALLKVVMRSWLPAGEALL 523
+ E I+ ++K + + + D KD + LL + + WLP A+L
Sbjct: 296 VSNRNLENIEKIIKALNIKVLPRDIKSKDPRNLLLAIFQQWLPLSTAIL 344
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 80.2 bits (189), Expect = 2e-16
Identities = 47/153 (30%), Positives = 83/153 (54%), Gaps = 2/153 (1%)
Frame = +2
Query: 47 YQTFQRIVENVNVIIATYNDDGGPMGEVRVDPSXGSVGFGSGLHGWAFTLKQFSEMYADK 226
Y + +++ VN I + D + RV P G+V F S G+ FTL F+++Y D+
Sbjct: 286 YHKLRHVIDEVNDNICQISKDL----KYRVSPELGNVCFASCDLGYCFTLSSFAKLYIDR 341
Query: 227 FK-IDLVKLMNRLWGENFFNPQTTKWSKQKADDNK-RSFCMYVLDPIYKVFDAIMKFKKE 400
ID+ RLWG+ +F+ +T K++KQ D + RSF ++L+P+YK+ + + E
Sbjct: 342 HGGIDVDLFSKRLWGDIYFDSKTRKFAKQSLDGSGVRSFVHFILEPLYKLHTLTISDEAE 401
Query: 401 EIDDLLKKIGVTIKHEDSDKDGKALLKVVMRSW 499
++ L + +K +D D K LL+++ S+
Sbjct: 402 KLKKHLSSFQIYLKPKDYLLDPKPLLQLICASF 434
>SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 35.9 bits (79), Expect = 0.004
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 185 AFTLKQFSEMYADKFKIDLVKLMNRLWGENFFNPQTT 295
A+ + + E Y DK K ++K +W FFNP+ T
Sbjct: 153 AYVISYYVEKYVDKAKFPIIKGFIEMWNRKFFNPRKT 189
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 32.3 bits (70), Expect = 0.054
Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = +2
Query: 188 FTLKQFS-EMYADKFKIDLVKLMNRLWGENFFNPQTTKWSKQKAD 319
FT+ + + E Y+ ++ + ++L+NRL ++F +P+T KW K D
Sbjct: 620 FTVLEIAAEEYSPNWESEELRLVNRLDVDSFLHPKTPKWVFNKQD 664
>SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 393
Score = 31.5 bits (68), Expect = 0.095
Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Frame = +2
Query: 194 LKQFSEMYADKFKIDLVKLMNRLWGENFFNPQTTKWSKQKADD----NKRSFCMYVLDPI 361
L QF + +++ F +D+ ++ LW ++ +P T + K A + N +F Y +D
Sbjct: 242 LFQFGDQFSEAFLLDVCSIITALWLKSVVDPNTPAYYKLIAQEAVLNNYTTFAEYYMD-- 299
Query: 362 YKVFDAIMKFKKEEIDDLLKK 424
++ + +DDL+ K
Sbjct: 300 ------LLDNSESNVDDLINK 314
>SPBC3B9.21 |dcp1||mRNA decapping complex subunit
Dcp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 127
Score = 27.5 bits (58), Expect = 1.5
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -2
Query: 433 DSNLLKEIINLLFLKFH-DGIEHLVDRIQNV 344
D N+L+ +NL LKFH IE ++D +V
Sbjct: 3 DENILRNAVNLQVLKFHYPEIESIIDIASHV 33
>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 4.7
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +2
Query: 362 YKVFDAIMKFKKEEIDDLLKKIGVTIKHE---DSDKDGKALLKVVMR 493
Y+V + + F+K+ +D ++K + E +S K G+ ++ VV R
Sbjct: 350 YEVIEISIPFQKDMLDTVVKVFSADARFEINNESQKTGEPVVSVVKR 396
>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1018
Score = 25.4 bits (53), Expect = 6.2
Identities = 9/28 (32%), Positives = 20/28 (71%)
Frame = -2
Query: 256 VHKLDKVNLEFVSIHLRELFEGESPPMK 173
+H ++K+N+E +++ + +F ESP +K
Sbjct: 716 LHFIEKLNIELLNLLINVVFVTESPGVK 743
>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 408
Score = 25.4 bits (53), Expect = 6.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 424 LLKEIINLLFLKFHDGIEHLVDRIQNVHAK 335
LL+ I ++FL H G+ H+ I+N K
Sbjct: 133 LLEPNIGMIFLYTHSGMTHITPSIRNDSTK 162
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 25.4 bits (53), Expect = 6.2
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Frame = -3
Query: 465 PSLSESSCLIVTPIFLRRSSISSFLNFMMASNTL*IGSKTYMQNERLLSSAFCFDHFVV* 286
P +S S C+ +F+ S S +F+M S L + S+ Y + + ++C + +
Sbjct: 417 PFISSSLCISPRYMFVVNSETVSVGSFLMVSEQLQMLSERYGFFDSIKFGSYCVSNLSIF 476
Query: 285 G---LKKFSPHNLFISLTRSIL 229
L+K S NL ++L +L
Sbjct: 477 PKLLLEKTSVINLIMALYVKLL 498
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 224 KFKIDLVKLMNRLWGENFFNPQTT 295
+F + KL+N +G +FNP+TT
Sbjct: 764 RFASLITKLLNVTFGIEYFNPKTT 787
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = -3
Query: 486 TTFSKALPSLSESSCLIVTPIFLRRSSISSFLNF 385
T+ + +PSL ++S I++ F+R + S+ ++F
Sbjct: 359 TSAQQKMPSLGDNSNTIISKYFIREITESNIVHF 392
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 25.0 bits (52), Expect = 8.3
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = +2
Query: 269 ENFFNPQTTKWSKQKADDNKRSFCMYVLDPIYKVFDAIMKFKKEEIDDLLKKIGVTIK-- 442
+++ + +K+K+ NK++ +LDPI ++ EI L K +G+ K
Sbjct: 72 DDYLDAHRKSSTKKKSSQNKQAKESKLLDPIAFQHKIALEEDDREIAHLEKMLGIKSKDK 131
Query: 443 --HEDSDKDGKALLK 481
H DK+ LL+
Sbjct: 132 SAHSKIDKEFGWLLE 146
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,496,641
Number of Sequences: 5004
Number of extensions: 50273
Number of successful extensions: 150
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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