Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31118
(467 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces pombe... 114 5e-27
SPBC30D10.09c |||HVA22/TB2/DP1 family protein|Schizosaccharomyce... 38 8e-04
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 33 0.016
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 29 0.27
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi... 29 0.35
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 28 0.82
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces... 26 3.3
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe... 26 3.3
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 25 4.4
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|... 25 4.4
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 5.8
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos... 25 5.8
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 25 7.6
>SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 182
Score = 114 bits (275), Expect = 5e-27
Identities = 51/136 (37%), Positives = 87/136 (63%), Gaps = 2/136 (1%)
Frame = +1
Query: 58 YKDNIEQSLNDKSKPWAKYFEL--AEQKVGVNRLYIFLGLVAFTGLYLVFGFGAELICNS 231
++ ++Q++ D A + +L E+ GV++LY+FL L+L +G L+ N
Sbjct: 3 FQVRVKQNMQDLDNRLAAFPQLNSLEKNFGVSKLYVFLTAAGIYALFLFLNWGGFLLTNL 62
Query: 232 IGFVYPAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFV 411
+ F PA+ S+ A+E+ K DDT+WLTY++V + +++EY+S I+ + P+YWLLK IF+
Sbjct: 63 LAFAMPAFFSINAIETTNKADDTQWLTYYLVTSFLNVIEYWSQLILYYVPVYWLLKAIFL 122
Query: 412 IWCYLPTEYNGSLVIY 459
IW LP ++NG+ +IY
Sbjct: 123 IWLALP-KFNGATIIY 137
>SPBC30D10.09c |||HVA22/TB2/DP1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 37.9 bits (84), Expect = 8e-04
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = +1
Query: 286 KDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVIWCYLPTEYNGSLVIY 459
+++ + + YW VY C + E + W P Y K +F +W P G+ IY
Sbjct: 97 EEERRRLMAYWCVYGCVTAAESILGRFLSWVPFYSTSKIVFWLWLLNP-RTQGAAFIY 153
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 33.5 bits (73), Expect = 0.016
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Frame = +1
Query: 187 LYLVFGFGAELICNSIGFVYPAYMSMKALESPQKDDDTKWLTYW--VVYACFSIVEYFSD 360
L LVFG LI IGF+ Y + +E PQ W T + +++ C I++
Sbjct: 654 LILVFG----LIYFIIGFLVYKYELIYQMEHPQHSTGELWSTIFLRMIFGCV-IMQLTMM 708
Query: 361 FIVGWFPLYWLLKCIFVIWCY-LPTEYNGSLVI 456
++ YWL IF + C+ + + YN S +I
Sbjct: 709 GLMSLRKAYWLSTVIFPLLCFTVISAYNFSTMI 741
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 29.5 bits (63), Expect = 0.27
Identities = 23/94 (24%), Positives = 41/94 (43%)
Frame = -1
Query: 371 PTMKSEKYSTIEKQAYTTQYVSHFVSSSFCGDSRAFIDMYAGYTKPIELHINSAPKPNTK 192
P+ K++ YS +++ TT + F + + F+ Y +L + SA N
Sbjct: 122 PSYKAKTYSLVKEYKGTT-FFDGFDFMNITDPTHGFVQ-YLDRNSSAKLGLISANSSNV- 178
Query: 191 YKPVNATKPKKMYNLFTPTFCSASSKYFAHGLLL 90
+ A K Y+ P+ S++YF HGL +
Sbjct: 179 ---IMAADSKHNYSSGRPSIRLQSTQYFEHGLFI 209
>SPAC20G8.04c |||mitochondrial electron transfer
flavoprotein-ubiquinone
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 29.1 bits (62), Expect = 0.35
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 212 APKPNTKYKPVNATKPKKMYNLFTPTFCSASSKYFA 105
A K +KYKP+N KP + + PT S S+ A
Sbjct: 510 ATKSASKYKPINYPKPDNVLSFDIPTSVSRSATMHA 545
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 27.9 bits (59), Expect = 0.82
Identities = 20/100 (20%), Positives = 43/100 (43%), Gaps = 5/100 (5%)
Frame = +1
Query: 136 VGVNRLYIFLGLVAFTGLYLVFGFGAELICNSIGFVYPAYMSMKALESPQKDDDTKWLTY 315
+G+ R +F L ++ + G ++ ++P+ +S AL D+D
Sbjct: 207 IGIGRAILF-NLCSYLSSFGWSGLALPILVYPPTLIWPSVLSSCALFKIFHDNDNTKACN 265
Query: 316 WVVYAC-FSIVEYFSDFIVGWFP--LYWLLKCI--FVIWC 420
W + + + + + FI WFP ++ L + ++ WC
Sbjct: 266 WTISRLRYFFIVFVASFIWYWFPDLIFPALSSLGAWISWC 305
>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 662
Score = 25.8 bits (54), Expect = 3.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 13 G*PLKDRTMASKLQEYKDNIEQSLNDKSKPW 105
G P + + L EYK E+S+ND S W
Sbjct: 20 GDPTVPKPNIASLDEYKRMYEESINDPSTFW 50
>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 410
Score = 25.8 bits (54), Expect = 3.3
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +1
Query: 331 CFSIVEYFSDFIVGWFPLYWLLKC 402
C ++EYF F + LY LL C
Sbjct: 337 CLRVIEYFRRFGYNDYQLYLLLSC 360
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 25.4 bits (53), Expect = 4.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 43 SKLQEYKDNIEQSLNDKSKPWAKYFE 120
+++ E D I++ LNDK K W F+
Sbjct: 53 NEMLEVMDIIDRRLNDKGKNWRHVFK 78
>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 329
Score = 25.4 bits (53), Expect = 4.4
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +1
Query: 313 YWVVYACFSIVEY--FSDFIVGWFPLYWLLKCIFVIWCYLP 429
Y Y FSI + FSDF++ YW+ + + W Y P
Sbjct: 146 YGYFYLFFSIALFLLFSDFLI-----YWIHRALHHRWLYAP 181
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.0 bits (52), Expect = 5.8
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -1
Query: 353 KYSTIEKQAYTTQYVSHFVSSSFCGDSRAF-IDMYAGYTKPIELHINSAPK 204
++S+IEK A+ QY SSSF D +F +D Y T P + IN K
Sbjct: 4463 QHSSIEKLAHYLQYEKKESSSSF--DIASFQLDEYLN-TLPSNIPINLVQK 4510
>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 785
Score = 25.0 bits (52), Expect = 5.8
Identities = 12/66 (18%), Positives = 30/66 (45%)
Frame = -1
Query: 389 QYNGNQPTMKSEKYSTIEKQAYTTQYVSHFVSSSFCGDSRAFIDMYAGYTKPIELHINSA 210
++ + P+ K EK +++ Y + +S D+++F+D+ G ++ +
Sbjct: 12 EHMNDSPSTK-EKADSVDISDYIVSHSDDSLSKDIKKDTKSFLDVEHGEISTVDEFEEDS 70
Query: 209 PKPNTK 192
P P +
Sbjct: 71 PYPEVR 76
>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 24.6 bits (51), Expect = 7.6
Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 2/78 (2%)
Frame = -1
Query: 371 PTMKSEKYSTIEKQAYTTQYVSHFVSSSFCGDSRAFIDMYAGYTKPIELHINSAPK--PN 198
P+M + IEK S +VS+ CGD+ + +G K I L K
Sbjct: 279 PSMIDFRIGFIEKAVKHPNADSLYVSTIHCGDAEGPRTVCSGLVKYIPLEQMQQRKVIVV 338
Query: 197 TKYKPVNATKPKKMYNLF 144
KPVN K +F
Sbjct: 339 ANLKPVNMRSVKSQAMVF 356
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,047,445
Number of Sequences: 5004
Number of extensions: 44412
Number of successful extensions: 152
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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