Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31116
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    30   0.43 
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    29   0.57 
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    26   5.4  
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   5.4  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    26   5.4  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    25   9.4  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    25   9.4  
SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.4  

>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +2

Query: 509 VENLEKKIEFLERDKKGNNIIIYGLKEGEKSTRELIENAKNKF--QKELNLVLEDY 670
           ++  E+KI   ER++K NN    G  E +K T++ + N+K+     K   L LE Y
Sbjct: 587 MQQREEKINSWERERKANN-FFRGHIEIDKKTKDFLNNSKDDLPVPKSPLLTLERY 641


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +2

Query: 509 VENLEKKIEFLERDKKGNNIIIYGLKEGEKSTRELIENAKNKFQ 640
           V++LEK I+ L+ D + +   +   K   K+ RE+I+N K K +
Sbjct: 684 VDSLEKNIQTLKEDLRKSEEALRFSKLEAKNLREVIDNLKGKHE 727


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 92  SVKLSDTECWKSSSRSKYWNSHHFEKKTEV 181
           S ++ D    K    +KY+NS HFE K  V
Sbjct: 108 SHRIKDKITTKCKGTTKYFNSRHFEIKNAV 137


>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 677 LYRNPLRLNLIPFGIYFSH 621
           L R+P RL ++PFGI  +H
Sbjct: 151 LVRHPHRLKMLPFGIQSAH 169


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 286 LVAVNVSCHVTLFDRSIVPTL*SNEFLEIK 197
           LVAVN  CH+ ++   +V    S +F E K
Sbjct: 126 LVAVNPYCHLPIYGDDVVRKYQSKQFKETK 155


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +2

Query: 602 TRELIENAKNKFQKELNLVLEDYDINKIYRIGKPNKGDKPRP 727
           TR L+ ++ ++  K L   + +  +N++Y  G  N   KP+P
Sbjct: 768 TRSLLLDSLSQQSKVLLCKIGNAAVNRVYEKGLSNPSLKPKP 809


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 6/21 (28%), Positives = 17/21 (80%)
 Frame = +2

Query: 551  KKGNNIIIYGLKEGEKSTREL 613
            ++G +++++G++EG +  RE+
Sbjct: 2068 RRGQSLVVWGIQEGRQCAREI 2088


>SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 261

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +2

Query: 506 KVENLEKKIEFLERDKKGNNIIIYGLKEGEKSTREL-IENAK 628
           +++ LEKK   L ++++ N  ++Y + +    T+EL  EN K
Sbjct: 32  QLKELEKKRSQLHKEEQINLQLVYAINDLRSKTKELKAENEK 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,038,827
Number of Sequences: 5004
Number of extensions: 59569
Number of successful extensions: 164
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)