Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31111
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    29   0.43 
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces...    28   0.98 
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce...    28   1.3  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.0  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    26   4.0  
SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit L37|...    26   5.2  

>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = -2

Query: 624 PAHFCREAVMRFGLKGGAAVVTILETLEPISQGGWRHLR 508
           P+ F  E V+   L GG AVV +  TLE I Q G  ++R
Sbjct: 90  PSSFTGEDVVELQLHGGTAVVDV--TLEAIKQSGIPNIR 126


>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 28.3 bits (60), Expect = 0.98
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 209 FRKMDKDNNGLIPRNEFIDGIVNTSEYFSD*RADFRSSPAPRSGAGT 349
           FR  DKDN+G I   +F D +    E  SD         A  + +G+
Sbjct: 84  FRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQLMVQEADPTNSGS 130


>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 174

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 173 FMNHKKSRLTDLFRKMDKDNNGLIPRNEFI 262
           F N +  R+   F K+D + +G I RNEF+
Sbjct: 18  FSNEEIERIRKRFIKIDANQSGSIDRNEFL 47


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 330  RDLVPGLLRDNAKPFIDIR 386
            +++V  LL DN KPF+D+R
Sbjct: 2250 KEVVWHLLEDNKKPFLDVR 2268


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 546 LEPISQGGWRHLRCKYLLAPKTTSHQ 469
           +E   +G + +LRCKYL +  TT H+
Sbjct: 590 MEEELRGKFINLRCKYLFSKLTTLHE 615


>SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 20/69 (28%), Positives = 31/69 (44%)
 Frame = -3

Query: 512 YVVNTYWLQKPLHTSWAVSSSTHICNK*KKAVTLQNSYFKIMSYVDEGFRVVTQQSRHQI 333
           YV +    +KP H S A SS+  + NK   +  L  +  K +     G   V ++  H+ 
Sbjct: 45  YVSSRVSPKKPQHNSDATSSAQKVANKTHTSSVLPGTILKGLCIKAGGVDPVARED-HEY 103

Query: 332 AAPGWIGSL 306
             P W+ SL
Sbjct: 104 --PEWLWSL 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,585,023
Number of Sequences: 5004
Number of extensions: 51432
Number of successful extensions: 116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)