Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31111
(637 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0217 + 1647319-1648327,1648462-1648577,1648650-1648817,164... 33 0.25
11_01_0216 + 1693889-1694897,1695034-1695149,1695222-1695389,169... 33 0.25
02_01_0684 - 5071994-5072134,5072240-5072365,5072452-5072608,507... 31 0.77
12_02_0370 + 18139557-18140469,18140561-18140704,18140804-181409... 29 2.3
12_01_0207 - 1559491-1559544,1559806-1560161,1560244-1560363,156... 29 2.3
05_05_0154 - 22774503-22774652,22774738-22774968,22775508-227756... 29 3.1
05_03_0625 - 16325827-16326495 29 3.1
07_03_1738 - 29141829-29141989,29142112-29142343,29142751-291427... 29 4.1
05_05_0309 - 23987669-23988042,23989485-23989560 29 4.1
05_05_0002 - 21412670-21413400,21414635-21414746 29 4.1
04_04_1535 + 34205426-34205593,34205697-34206869 29 4.1
03_05_0739 + 27271404-27271988,27272265-27272411 29 4.1
03_02_0817 + 11492699-11492774,11493605-11493978 29 4.1
01_06_1749 - 39636951-39638102 29 4.1
01_06_1085 + 34414353-34414428,34416038-34416407,34416534-34416651 29 4.1
01_01_1156 - 9194477-9194485,9194801-9195156,9197783-9197858 29 4.1
11_06_0212 - 21319441-21319498,21319737-21319867,21319944-213200... 28 5.4
03_06_0239 - 32578231-32578353,32578431-32578655,32579081-325792... 28 5.4
03_06_0235 + 32539025-32539886,32540330-32540473,32540595-325407... 28 5.4
02_04_0301 + 21807537-21808460,21809786-21810409 28 5.4
07_01_0437 - 3322132-3322251,3322345-3322569,3322953-3323120,332... 28 7.1
05_05_0315 - 24030695-24030787,24030896-24030995,24031120-240312... 28 7.1
01_01_0111 + 806850-806938,807213-807291,807533-807855,808291-80... 28 7.1
05_03_0527 - 15025031-15025993 27 9.4
05_03_0524 + 14994170-14995132 27 9.4
>12_01_0217 +
1647319-1648327,1648462-1648577,1648650-1648817,
1648911-1649038,1649121-1649220,1649329-1649433
Length = 541
Score = 32.7 bits (71), Expect = 0.25
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +2
Query: 197 LTDLFRKMDKDNNGLIPRNEFIDGIVNTSEYFSD*RADFRSSPAPRSGAG 346
L ++F+ +DKDN+G I E +G+ FSD + A G G
Sbjct: 389 LKEMFKNIDKDNSGTITLEELKNGLAKQGTKFSDNEIEQLMEAADADGNG 438
>11_01_0216 +
1693889-1694897,1695034-1695149,1695222-1695389,
1695482-1695609,1695692-1695791,1696124-1696168
Length = 521
Score = 32.7 bits (71), Expect = 0.25
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +2
Query: 197 LTDLFRKMDKDNNGLIPRNEFIDGIVNTSEYFSD*RADFRSSPAPRSGAG 346
L ++F+ +DKDN+G I E +G+ FSD + A G G
Sbjct: 389 LKEMFKNIDKDNSGTITLEELKNGLAKQGTKFSDNEIEQLMEAADADGNG 438
>02_01_0684 -
5071994-5072134,5072240-5072365,5072452-5072608,
5073115-5073224,5073309-5073456,5073581-5073735,
5074144-5074249,5074337-5074436,5074775-5074880,
5075013-5075444
Length = 526
Score = 31.1 bits (67), Expect = 0.77
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +2
Query: 200 TDLFRKMDKDNNGLIPRNEFIDGIVNTS 283
T LF K+DK+N G + R+ FID +N++
Sbjct: 197 TVLFGKIDKENTGFVTRDAFIDFWLNSN 224
>12_02_0370 +
18139557-18140469,18140561-18140704,18140804-18140956,
18141032-18141147,18141231-18141398,18142110-18142334,
18142458-18142577
Length = 612
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 194 RLTDLFRKMDKDNNGLIPRNEFIDGIVNTSEYF 292
RL D+ ++D+DN+G I NEF+ + T+ F
Sbjct: 561 RLEDMIGEVDQDNDGRIDYNEFVAMMQKTTTGF 593
>12_01_0207 -
1559491-1559544,1559806-1560161,1560244-1560363,
1561523-1561568,1561741-1561858,1561981-1562093,
1562586-1562658,1562743-1562882,1563005-1563075,
1563228-1563396,1563594-1563659,1564052-1564150,
1564271-1564444,1564720-1564798,1564901-1565007,
1565391-1565435
Length = 609
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 197 LTDLFRKMDKDNNGLIPRNEFIDGIVNTSEYFSD 298
+ D FR DKD NG I +E + N S+ SD
Sbjct: 534 IRDAFRVFDKDQNGFITPDELRHVMANLSDPLSD 567
>05_05_0154 -
22774503-22774652,22774738-22774968,22775508-22775675,
22775760-22775936,22776281-22776302,22776351-22776417,
22776583-22776774,22776819-22776962,22778421-22779102
Length = 610
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/50 (24%), Positives = 22/50 (44%)
Frame = +2
Query: 197 LTDLFRKMDKDNNGLIPRNEFIDGIVNTSEYFSD*RADFRSSPAPRSGAG 346
+ D+F+ MD DN+G++ E GI + ++ +G G
Sbjct: 442 IKDMFKVMDTDNDGIVSYEELKSGIAKFGSHLAESEVQMLIEAVDTNGRG 491
>05_03_0625 - 16325827-16326495
Length = 222
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Frame = +2
Query: 524 PP*DIGSKVSSIVTTAAPPFKPKRITASRQKWA----GWCYL 637
PP + S+ ++ ++PPF P R+ R +WA GWC L
Sbjct: 21 PPPPAAPRCSTALSPSSPPFHPTRL---RIRWAPPPVGWCKL 59
>07_03_1738 -
29141829-29141989,29142112-29142343,29142751-29142792,
29143312-29143410,29143575-29143667,29143742-29143876,
29144251-29144290,29144475-29144844,29146575-29146650
Length = 415
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/53 (32%), Positives = 21/53 (39%)
Frame = +2
Query: 188 KSRLTDLFRKMDKDNNGLIPRNEFIDGIVNTSEYFSD*RADFRSSPAPRSGAG 346
+ L + FR DKD NG I E + N E +D D A G G
Sbjct: 83 EEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDG 135
>05_05_0309 - 23987669-23988042,23989485-23989560
Length = 149
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/53 (32%), Positives = 21/53 (39%)
Frame = +2
Query: 188 KSRLTDLFRKMDKDNNGLIPRNEFIDGIVNTSEYFSD*RADFRSSPAPRSGAG 346
+ L + FR DKD NG I E + N E +D D A G G
Sbjct: 83 EEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDG 135
>05_05_0002 - 21412670-21413400,21414635-21414746
Length = 280
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 126 IMSACLSCVFGTVAMCLFNYVVKPRLKLRRA 34
++S+CL+C A+ F Y V P L L +A
Sbjct: 95 VVSSCLNCFLSGGALYRFEYAVNPALFLAKA 125
>04_04_1535 + 34205426-34205593,34205697-34206869
Length = 446
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +2
Query: 464 PNWCEVVFGANRYLQRKCRHPP*DIGSKVSSIVTT 568
PN C+ FG + Y C HPP G+ TT
Sbjct: 97 PNLCDSYFGGDMYKGFYCEHPPAPPGATTPKDNTT 131
>03_05_0739 + 27271404-27271988,27272265-27272411
Length = 243
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +2
Query: 197 LTDLFRKMDKDNNGLIPRNEFIDGIVNTSEYFSD 298
+ D+F MD DNNG + E DG+ ++
Sbjct: 53 IKDMFALMDTDNNGRVTLQELKDGLTKVGSKLAE 86
>03_02_0817 + 11492699-11492774,11493605-11493978
Length = 149
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/53 (32%), Positives = 21/53 (39%)
Frame = +2
Query: 188 KSRLTDLFRKMDKDNNGLIPRNEFIDGIVNTSEYFSD*RADFRSSPAPRSGAG 346
+ L + FR DKD NG I E + N E +D D A G G
Sbjct: 83 EEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDG 135
>01_06_1749 - 39636951-39638102
Length = 383
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 551 SSIVTTAAPPFKPKRITA 604
SS+ + AAPPF P RIT+
Sbjct: 164 SSVASAAAPPFDPSRITS 181
>01_06_1085 + 34414353-34414428,34416038-34416407,34416534-34416651
Length = 187
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/53 (32%), Positives = 21/53 (39%)
Frame = +2
Query: 188 KSRLTDLFRKMDKDNNGLIPRNEFIDGIVNTSEYFSD*RADFRSSPAPRSGAG 346
+ L + FR DKD NG I E + N E +D S A G G
Sbjct: 83 EEELKEAFRVFDKDQNGFISATELRHVMANIGERLTDEEVGEMISEADVDGDG 135
>01_01_1156 - 9194477-9194485,9194801-9195156,9197783-9197858
Length = 146
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/53 (32%), Positives = 21/53 (39%)
Frame = +2
Query: 188 KSRLTDLFRKMDKDNNGLIPRNEFIDGIVNTSEYFSD*RADFRSSPAPRSGAG 346
+ L + FR DKD NG I E + N E +D D A G G
Sbjct: 83 EEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDG 135
>11_06_0212 -
21319441-21319498,21319737-21319867,21319944-21320033,
21320141-21320298,21320646-21320721
Length = 170
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +2
Query: 188 KSRLTDLFRKMDKDNNGLIPRNEFIDGIVNTSEYFSD*RADFRSSPAPRSGAG 346
+ L FR DKD+NG I RNE + + E ++ D A + G
Sbjct: 86 EEELRKAFRIFDKDDNGFISRNELSMVMASLGEEMTEDEIDDMMKAADSNNDG 138
>03_06_0239 -
32578231-32578353,32578431-32578655,32579081-32579248,
32579331-32579446,32579540-32579692,32579779-32579922,
32580775-32581576
Length = 576
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 191 SRLTDLFRKMDKDNNGLIPRNEFID 265
+R+ D+ +D+DN+G I NEF++
Sbjct: 523 TRIEDIIGDIDQDNDGRIDYNEFVE 547
>03_06_0235 +
32539025-32539886,32540330-32540473,32540595-32540747,
32540871-32540986,32541254-32541421,32541534-32541758,
32541884-32542015
Length = 599
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +2
Query: 194 RLTDLFRKMDKDNNGLIPRNEFI 262
+L ++ R++D+DN+G I NEF+
Sbjct: 544 QLEEMIREVDEDNDGRIDYNEFV 566
>02_04_0301 + 21807537-21808460,21809786-21810409
Length = 515
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 132 KIIMSACLSCVFGTVAMCLFNYVVKPRLKL 43
K+I+ CLS +F V L + +KPRL L
Sbjct: 4 KLILDLCLSALFVVVLSKLVSSAMKPRLNL 33
>07_01_0437 -
3322132-3322251,3322345-3322569,3322953-3323120,
3323207-3323322,3323394-3323546,3323655-3323798,
3324475-3325255
Length = 568
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 191 SRLTDLFRKMDKDNNGLIPRNEFI 262
+ L D+ + +D+DN+G I NEF+
Sbjct: 516 AHLEDIIKDIDQDNDGRIDYNEFV 539
>05_05_0315 -
24030695-24030787,24030896-24030995,24031120-24031247,
24031350-24031517,24031626-24031741,24031773-24031896,
24032085-24032254,24032255-24032999
Length = 547
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +2
Query: 197 LTDLFRKMDKDNNGLIPRNEFIDGIVNTSEYFSD*RADFRSSPAPRSGAGT 349
L ++F+ MD DN+G I +E G+ ++ A G GT
Sbjct: 399 LKEMFKSMDSDNSGTITVDELRKGLAKKGTKLTEAEVQQLMEAADADGNGT 449
>01_01_0111 +
806850-806938,807213-807291,807533-807855,808291-808375,
808468-808488,808704-808721
Length = 204
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -2
Query: 612 CREAVMRFGLKGGAAVVTILETLEPISQGGWRHLRCKYLLA 490
CR+A + GL+ AA IL P+ GW R + LA
Sbjct: 130 CRDAGVTAGLRAAAAAAIILSKANPV-PNGWSARRWQLQLA 169
>05_03_0527 - 15025031-15025993
Length = 320
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = +2
Query: 545 KVSSIVTTAAPPFKPKRITASRQKWA---GWCYL 637
+ S+ ++ ++PPFKP R+ + WA GWC L
Sbjct: 124 RCSTPLSPSSPPFKPSRVIV--RWWAPPGGWCKL 155
>05_03_0524 + 14994170-14995132
Length = 320
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = +2
Query: 545 KVSSIVTTAAPPFKPKRITASRQKWA---GWCYL 637
+ S+ ++ ++PPFKP R+ + WA GWC L
Sbjct: 124 RCSTPLSPSSPPFKPSRVIV--RWWAPPGGWCKL 155
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,449,289
Number of Sequences: 37544
Number of extensions: 353324
Number of successful extensions: 887
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -