Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31111
         (637 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   2.5  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   4.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   4.3  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   4.3  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -1

Query: 313 EVCTSVTKVLTGVDDAIDELVPRYQPVVVLV 221
           + C  +  V TGVDD +      +QP ++++
Sbjct: 118 DACDRLWGVDTGVDDILGNNTVIHQPRIIII 148


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = +1

Query: 304 CRLPIQPGAAIWCRDCCVTTRNPSST*DMILKYEFCSVTAFFYLLH 441
           C L +QP     CR         S   D+I +  F  V AFF L +
Sbjct: 389 CELHMQPRKKNCCRSWLSKFPTRSKRIDVISRIFFPIVFAFFNLAY 434


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = +1

Query: 304 CRLPIQPGAAIWCRDCCVTTRNPSST*DMILKYEFCSVTAFFYLLH 441
           C L +QP     CR         S   D+I +  F  V AFF L +
Sbjct: 389 CELHMQPRKKNCCRSWLSKFPTRSKRIDVISRIFFPIVFAFFNLAY 434


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 509 VVNTYWLQKPLHTSWAVSSST 447
           ++ TYWL+K  H S +    T
Sbjct: 589 IMKTYWLEKREHRSSSTKGIT 609


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,664
Number of Sequences: 438
Number of extensions: 3995
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)