Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31108
         (400 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025462-2|AAN72422.1| 1075|Caenorhabditis elegans Phospholipase...    27   5.0  
AF025462-1|AAN72423.1| 1068|Caenorhabditis elegans Phospholipase...    27   5.0  
AF067612-5|AAM98011.3|  195|Caenorhabditis elegans Egg laying de...    27   6.5  
Z92781-5|CAB07179.2| 1391|Caenorhabditis elegans Hypothetical pr...    26   8.7  

>AF025462-2|AAN72422.1| 1075|Caenorhabditis elegans Phospholipase c
           like protein 1,isoform a protein.
          Length = 1075

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 9/26 (34%), Positives = 20/26 (76%)
 Frame = -2

Query: 114 NLCVPITKVSSSPQCIYVKLLTGQDI 37
           ++ VP  +V +SPQ +++++L+GQ +
Sbjct: 675 DMFVPSDRVPTSPQILHLRILSGQQL 700


>AF025462-1|AAN72423.1| 1068|Caenorhabditis elegans Phospholipase c
           like protein 1,isoform b protein.
          Length = 1068

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 9/26 (34%), Positives = 20/26 (76%)
 Frame = -2

Query: 114 NLCVPITKVSSSPQCIYVKLLTGQDI 37
           ++ VP  +V +SPQ +++++L+GQ +
Sbjct: 668 DMFVPSDRVPTSPQILHLRILSGQQL 693


>AF067612-5|AAM98011.3|  195|Caenorhabditis elegans Egg laying
           defective protein 4,isoform d protein.
          Length = 195

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 254 HMRNSCDGMFVRXVHF*FQNETIKRXNAPVRSVVY 358
           H RN  DG +V  +H  F+   + R   P R++ Y
Sbjct: 49  HRRNVDDGYYVEEIH--FEPPQVVRKKQPTRNLFY 81


>Z92781-5|CAB07179.2| 1391|Caenorhabditis elegans Hypothetical
           protein F09C3.1 protein.
          Length = 1391

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 311 SEIRNELXERTCRRMSYAYVSRCYGXRS 228
           SE+  ++ ER   R++Y Y+ RC   R+
Sbjct: 26  SEVLEDVDERRLNRIAYEYLCRCEEVRT 53


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,572,526
Number of Sequences: 27780
Number of extensions: 123291
Number of successful extensions: 225
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)