Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31096
         (486 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha...   158   5e-40
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p...   158   5e-40
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz...    38   0.001
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    29   0.37 
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    27   1.5  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    27   2.0  
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...    26   2.6  
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    26   3.5  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    25   6.1  
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    25   8.0  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   8.0  

>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 203

 Score =  158 bits (383), Expect = 5e-40
 Identities = 80/118 (67%), Positives = 94/118 (79%)
 Frame = +3

Query: 132 IKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSL 311
           IKLF ++    V+V D+SL DYI++     + LPH+AGR+  KRFRKA+C IVERLTNSL
Sbjct: 18  IKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQTKRFRKARCFIVERLTNSL 75

Query: 312 MMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTV 485
           MM+GRNNGKKL+A RIVKHAFEII LLT +NPLQVLV A+   GPREDSTRIG AGTV
Sbjct: 76  MMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTV 133


>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score =  158 bits (383), Expect = 5e-40
 Identities = 80/118 (67%), Positives = 94/118 (79%)
 Frame = +3

Query: 132 IKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSL 311
           IKLF ++    V+V D+SL DYI++     + LPH+AGR+  KRFRKA+C IVERLTNSL
Sbjct: 18  IKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQTKRFRKARCFIVERLTNSL 75

Query: 312 MMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTV 485
           MM+GRNNGKKL+A RIVKHAFEII LLT +NPLQVLV A+   GPREDSTRIG AGTV
Sbjct: 76  MMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTV 133


>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
           S7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 37.5 bits (83), Expect = 0.001
 Identities = 23/53 (43%), Positives = 28/53 (52%)
 Frame = +3

Query: 288 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGP 446
           V+ L N +M     +GKK  A +IV  A  II   TGENP+ VL  AI    P
Sbjct: 126 VQHLVNLIM----RDGKKAKAEKIVATALSIIQKETGENPIDVLKQAIAEISP 174


>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 29.1 bits (62), Expect = 0.37
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 347 GRTYCQTCV*NYSLVNWRKPSASTRDCHYQLWT 445
           G TYC  C     L+NW K S S   C  +L+T
Sbjct: 101 GHTYCYEC-----LLNWLKESKSCPTCRQKLYT 128


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 26  KYQSWPRENWNDDVAEAGSVVVETMSLPQAADIPGNQ 136
           ++  W R++WN DV    S   E  SL +A   P NQ
Sbjct: 160 RFPKWSRKSWNPDVNSTTSSPSEVGSLDKAGG-PLNQ 195


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +3

Query: 111 KPPTFLEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYL 230
           K PTF  IKL  + +  + ++    L ++  ++EKYA+YL
Sbjct: 860 KEPTF--IKLMKKVNILESRLLSNPLHNFSELEEKYAEYL 897


>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 126 LEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 254
           + +  FGR    ++++++  +   I+V+EKYAK  P    R A
Sbjct: 11  ISLAAFGR---KELEIAENEMPGLIAVREKYAKSQPLKGARIA 50


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +2

Query: 296 PYKLSNDARSEQWQKTDGRTYCQTCV*NYSLVNWRKPSAST 418
           PYK+   +  + W +  G+TY  + +  + L   R+ +AST
Sbjct: 138 PYKIVEHSNGDAWLEARGKTYSPSQIGGFILSKMRE-TAST 177


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +3

Query: 246 RYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIH 386
           +Y  KR   A+  +V R       H R N  KL +  +  H F ++H
Sbjct: 390 KYPRKRQEIAE--LVIRCLQDRSSHVRRNAIKLFSKLLTTHPFSVMH 434


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = -1

Query: 273 LYGNACVHTCQLNEVNILRTSL*RKCSPAETYQRLAHRSNSICRKA 136
           L  N C+    LNE ++ + SL R   P++    ++ R +S+ +K+
Sbjct: 147 LLNNCCIGIANLNEDSVHKISLTRSGKPSQLV-TVSCRHSSVIQKS 191


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
            Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 375  EIIHLLTGENPLQVLVTAIINSGPREDSTR 464
            EI  +LTGENP ++   AI+    R  + R
Sbjct: 1034 EIFLMLTGENPEELQADAIVPVNVRRVTNR 1063


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,074,722
Number of Sequences: 5004
Number of extensions: 41455
Number of successful extensions: 108
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)