Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31096
(486 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300... 196 6e-51
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419 191 3e-49
02_02_0272 - 8452994-8453187,8453850-8454975 30 0.86
09_04_0020 + 13837257-13837281,13837364-13837550,13837655-138377... 27 6.0
07_03_1503 + 27017933-27018063,27019668-27019727,27019996-270201... 27 6.0
05_05_0116 - 22496535-22496576,22496974-22497058,22497468-224975... 27 6.0
04_04_1155 - 31308704-31309051,31309301-31309451,31309532-313097... 27 6.0
03_06_0269 - 32761354-32761857,32762094-32762190,32762387-327624... 27 6.0
06_03_1332 - 29403320-29407804 27 8.0
>11_04_0317 -
16328558-16328612,16328698-16328901,16329794-16330065,
16330152-16330220
Length = 199
Score = 196 bits (479), Expect = 6e-51
Identities = 93/120 (77%), Positives = 105/120 (87%), Gaps = 1/120 (0%)
Frame = +3
Query: 129 EIKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTN 305
E+KLF RWS DVQV+D+SL DY++V K+A YLPH+AGRY+ KRFRKAQCPIVERLTN
Sbjct: 10 EVKLFSRWSFEDVQVNDISLADYLAVNPTKHATYLPHTAGRYSAKRFRKAQCPIVERLTN 69
Query: 306 SLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTV 485
SLMMHGRNNGKK+MAVRIVKHA EIIHLLT NP+QV+V AIINSGPRED+TRIG AG V
Sbjct: 70 SLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAV 129
>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
Length = 200
Score = 191 bits (465), Expect = 3e-49
Identities = 90/119 (75%), Positives = 103/119 (86%), Gaps = 1/119 (0%)
Frame = +3
Query: 132 IKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTNS 308
+KLF WS DVQV+D+SL DY++V K+A YLPH+AGRY+ KRFRKAQCP+VERLTNS
Sbjct: 12 VKLFNCWSFEDVQVNDISLADYLAVSSTKHATYLPHTAGRYSAKRFRKAQCPLVERLTNS 71
Query: 309 LMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTV 485
LMMHGRNNGKK+MAVRIVKHA EIIHLLT NP+QV+V AIINSGPRED+TRIG AG V
Sbjct: 72 LMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAV 130
>02_02_0272 - 8452994-8453187,8453850-8454975
Length = 439
Score = 30.3 bits (65), Expect = 0.86
Identities = 13/26 (50%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Frame = +2
Query: 32 QSWPREN-WNDDVAEAGSVVVETMSL 106
Q W R+N W+DDV+E+G V+ +T+ L
Sbjct: 284 QFWRRKNDWDDDVSESGWVLEKTVQL 309
>09_04_0020 +
13837257-13837281,13837364-13837550,13837655-13837727,
13837769-13837804,13838161-13838281,13838399-13838472,
13838594-13838730,13839262-13839325,13839693-13839758,
13840061-13840130,13840206-13840310,13840840-13840981,
13841343-13841439,13841939-13842460
Length = 572
Score = 27.5 bits (58), Expect = 6.0
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = +1
Query: 88 CGNHV-FTTSRRHSWKSSFSADGVATMCKSLICLCRTTFPLKRSTQNIYLIQLAGMHTSV 264
CG H+ SRR+ ADG A ++ C+ T F L Y ++ G H V
Sbjct: 33 CGMHMGHRDSRRYPDFDRLLADGAADYTAAISCVVITHFHLDHIGALPYFTEVCGYHGPV 92
>07_03_1503 + 27017933-27018063,27019668-27019727,27019996-27020101,
27020254-27020325,27021008-27021061,27021707-27021856,
27022206-27022547,27022651-27024684,27024706-27024947,
27025658-27026235,27026329-27028183,27028533-27028851,
27028980-27029417
Length = 2126
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 288 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTG 398
+ L ++HG N ++++AV +K +I+HLL G
Sbjct: 1328 ISALVVGSVIHGVVNIERMVAVLKIKDGLDILHLLRG 1364
>05_05_0116 -
22496535-22496576,22496974-22497058,22497468-22497545,
22497656-22497803,22498612-22498771,22499056-22499058
Length = 171
Score = 27.5 bits (58), Expect = 6.0
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = -2
Query: 218 VLLFNGNVVLQRHIRDLHIVATPSAEK 138
+++F+G++V+ + I+DLH T E+
Sbjct: 57 IVMFDGHIVVYKFIQDLHFFVTGGEEE 83
>04_04_1155 -
31308704-31309051,31309301-31309451,31309532-31309763,
31309854-31310064,31310304-31310422,31310507-31310581,
31310789-31310990,31311075-31311454,31311569-31311633,
31311735-31311779,31312166-31312231,31312667-31312741,
31313022-31313093,31313659-31313727,31313813-31313884,
31313995-31314066,31314441-31314512,31314597-31314668,
31315091-31315162,31315279-31315474,31316094-31316202
Length = 924
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = -1
Query: 351 RPSVFCHCSDRASLESL*GAPRLGTGLYGNACVHTCQLNEVNIL 220
RP+VF + R++ E+ + RLG G YG V+ +LN+ ++
Sbjct: 579 RPNVFSYSELRSATENFSSSNRLGEGGYG--AVYKGKLNDGRVV 620
>03_06_0269 -
32761354-32761857,32762094-32762190,32762387-32762421,
32763035-32763040
Length = 213
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +1
Query: 100 VFTTSRRHSWKSSFSADGVATMCKSLICLCRTTFPLKRSTQNI 228
VF T + SWK GV T ++C+ F R T+N+
Sbjct: 50 VFLTMAQESWKKEAEETGVHTPEAPILCVNNCGFFGSRMTENM 92
>06_03_1332 - 29403320-29407804
Length = 1494
Score = 27.1 bits (57), Expect = 8.0
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +1
Query: 121 HSWKSSFSADGVATMCKSLICLCRTTFPLKRSTQNIYLIQLAGMHT 258
HS ++ FS G T S + FP S Q +YL + GM T
Sbjct: 1264 HSLRA-FSIWGCPTFLSSYYSTSLSCFPFPSSLQKMYLSDVRGMET 1308
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,596,946
Number of Sequences: 37544
Number of extensions: 272831
Number of successful extensions: 655
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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