Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31089
         (430 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    28   0.71 
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit...    25   3.8  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    25   3.8  
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch...    25   3.8  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    25   3.8  
SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom...    25   3.8  
SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces ...    25   6.6  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    24   8.7  
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    24   8.7  

>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 343

 Score = 27.9 bits (59), Expect = 0.71
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 329 LGSRRPQPVSVSMPPNRSCSSIRN 258
           + ++ P+P S S PP+ S SS+ N
Sbjct: 64  ISTQNPEPTSASTPPSASASSLPN 87


>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
           Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -2

Query: 366 LSGASFMLGLQTVRITTPSACFSFDAAES*LQFNKESLFTAR 241
           LS A  ML L T+ +   + C+ FD A++     K+S+FT +
Sbjct: 328 LSDAEVML-LATILVAA-NVCYGFDDAQTRNSKYKDSMFTVK 367


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = -3

Query: 377 NRLLCPAHPSCWDCRPLGSRRPQPVSVSMPPNRSCSSIRNP 255
           N L  P+H SC      G +   P++  +P +   S + +P
Sbjct: 285 NVLAMPSHTSCIQLAACGPKETLPMNPDLPADLFTSCLTSP 325


>SPAC343.17c |||WD repeat protein, human WDR70
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 576

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -3

Query: 347 CWDCRPLGSRRPQPVSVSMPPNRSCSSI-RNPCSR 246
           CWD   L +  P P  +  P + +  ++ R P S+
Sbjct: 115 CWDLNGLSATNPHPFKIIDPTDTNADNVGRYPVSK 149


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = -3

Query: 314  PQPVSVSMPPNRSCSSIRNPCSRQEACLLSEVPPAQQRFPLEDRTRISHGQPPCDDL 144
            P PV   +PP+R   S ++   +Q    + +  P  Q   ++D    S  +PP  +L
Sbjct: 918  PAPVKPPVPPSRRDRSAQDGVVQQATPHIQDEFPPIQFNEIDDDESSSDEEPPMSNL 974


>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -3

Query: 332 PLGSRRPQPVSVSMPPNRSCSSIRNPCSRQEACLLSEVP 216
           PL  + P+  +    P+     ++N  +    CLLSE+P
Sbjct: 51  PLIKKLPRSKNFDYYPSNPIGDLKNSIASHPDCLLSELP 89


>SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 170

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -3

Query: 365 CPAHPSCWDCRPLGSRRPQP 306
           CP  P+C D  P  S  P P
Sbjct: 144 CPLGPNCPDAHPKHSEPPHP 163


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 152 HTEAGRGIFVSDLQEGSAAEQA 217
           HT+  + IFV D + G AA  A
Sbjct: 103 HTKKNKQIFVEDSRRGGAASNA 124


>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -3

Query: 347 CWDCRPLGSRRPQPVSVSMPPNRSCSSIRNPCSRQEA 237
           C  CR L   +  P ++++  N   ++I+  CS  EA
Sbjct: 18  CGPCRRLHYHKDNPNNINIAKNLLNNNIQARCSTNEA 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,585,585
Number of Sequences: 5004
Number of extensions: 29737
Number of successful extensions: 94
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)