Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31089
(430 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0342 - 2691294-2691441,2691589-2691667,2691737-2691799,269... 31 0.30
05_01_0329 - 2580083-2580115,2580787-2580864,2580986-2581078,258... 30 0.69
03_02_0911 - 12329146-12329610 29 1.2
03_05_0122 - 21025469-21026719 29 1.6
02_05_0497 - 29502012-29502101,29502128-29502197,29502302-295024... 29 1.6
09_05_0012 - 20063456-20064601 29 2.1
08_02_0202 - 14202996-14203241,14203630-14203823,14203947-142045... 29 2.1
04_03_1049 + 22015053-22015083,22015770-22015885,22016013-220161... 29 2.1
08_02_1199 - 25209454-25210896,25211005-25211519,25211751-252119... 28 2.8
04_03_0561 - 17188147-17188236,17188269-17188355,17188441-171884... 28 2.8
10_01_0267 - 2828966-2829340,2831164-2831629,2833390-2833487,283... 28 3.7
09_02_0466 + 9599389-9599662,9600324-9600643,9600950-9601186,960... 28 3.7
03_02_0981 + 12917195-12917572,12917661-12917818,12918732-129187... 28 3.7
02_02_0431 - 10152228-10152352,10152688-10152919,10153602-101538... 28 3.7
02_02_0429 - 10135695-10135769,10135872-10135972,10138416-101385... 28 3.7
11_06_0453 + 23781803-23781814,23782700-23782781,23783334-23784160 27 4.9
11_03_0142 + 10675764-10675991,10676533-10676943 27 4.9
03_05_0582 + 25823862-25824459,25824915-25825063,25825691-258259... 27 4.9
08_02_0952 - 22981116-22981268,22981930-22981974,22982052-229821... 27 6.4
04_04_1461 - 33767398-33767780,33768032-33768116 27 6.4
>05_01_0342 -
2691294-2691441,2691589-2691667,2691737-2691799,
2692852-2692917,2694939-2695004,2695194-2695283,
2695376-2695463,2695552-2695629,2695732-2695824,
2695907-2696024,2696418-2696539,2696633-2696930,
2697645-2697649
Length = 437
Score = 31.5 bits (68), Expect = 0.30
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +2
Query: 149 RHTEAGRGIFVSDLQEGSAAEQAGLQIGDMLLAVNRDSL 265
R T G+ V ++ EGS E+ G++IGD++ +N + +
Sbjct: 169 RKTHICDGLIVKEVSEGSILEKLGVRIGDIIECLNGERI 207
>05_01_0329 -
2580083-2580115,2580787-2580864,2580986-2581078,
2581209-2581326,2583350-2583440,2585167-2585207,
2585854-2585981,2586078-2586353,2587318-2587472,
2587557-2587700,2587991-2588567
Length = 577
Score = 30.3 bits (65), Expect = 0.69
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2
Query: 170 GIFVSDLQEGSAAEQAGLQIGDMLLAVN 253
G+ V ++ EGS AE+ G+++GD++ N
Sbjct: 505 GLIVKEVSEGSIAEKLGVRVGDVIKFFN 532
>03_02_0911 - 12329146-12329610
Length = 154
Score = 29.5 bits (63), Expect = 1.2
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +1
Query: 112 GSSGAGHHD---NRRSSHGGWPWDIRVRSSRGKRC*AGGTSDRRHASCREQG 258
G+ AGH RR+ HGGW IR+R+ RC GG ++ A +G
Sbjct: 23 GAVAAGHGQATFGRRAVHGGWLVAIRLRA----RCRCGGGTEPVEARKEREG 70
>03_05_0122 - 21025469-21026719
Length = 416
Score = 29.1 bits (62), Expect = 1.6
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +2
Query: 170 GIFVSDLQEGSAAEQAGLQIGDMLLAV 250
G+ V ++ GSAA +AGL GD++L+V
Sbjct: 179 GVLVPEVIPGSAAARAGLLPGDVILSV 205
>02_05_0497 - 29502012-29502101,29502128-29502197,29502302-29502411,
29502530-29502641,29503341-29503498,29503592-29503807,
29504127-29504354,29504722-29504801,29504886-29505056,
29505179-29505281,29505369-29505551,29506313-29506813,
29506935-29507100,29507517-29507566,29508047-29508127,
29508291-29508398,29508874-29508939,29509053-29509109,
29509442-29509507,29509917-29510006,29510850-29510975,
29511681-29511717,29512192-29512250,29512562-29512615,
29513294-29513428,29513542-29513612,29513720-29513957
Length = 1141
Score = 29.1 bits (62), Expect = 1.6
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 5/51 (9%)
Frame = +2
Query: 197 GSAAEQAGLQIGDMLLAVNRDSLLNCSYD--SAASKLKQ---AEGVVILTV 334
GS AE L+ GDM+LA+N++ + C D +A KL Q ++GV+ +T+
Sbjct: 911 GSKAENL-LEQGDMILAINKEP-ITCFLDIENACQKLDQSVDSDGVLNMTI 959
>09_05_0012 - 20063456-20064601
Length = 381
Score = 28.7 bits (61), Expect = 2.1
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 17 PLTQFPAALEEESDDRDR-FAGYKGVRDITVKK 112
P Q P AL+EE RD FAGY +R V +
Sbjct: 34 PPIQSPVALQEEEGPRDAAFAGYAPIRSPVVSR 66
>08_02_0202 -
14202996-14203241,14203630-14203823,14203947-14204559,
14205422-14205535
Length = 388
Score = 28.7 bits (61), Expect = 2.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 365 CPAHPSCWDCRPLGSRRPQPVSVSMP 288
CP H + DC PL PQP+ + P
Sbjct: 172 CPMHTAV-DCMPLSHAHPQPMPMQFP 196
>04_03_1049 +
22015053-22015083,22015770-22015885,22016013-22016108,
22016229-22016285,22016468-22016620,22016754-22016838,
22017097-22017187,22017324-22017488,22017813-22017932,
22018020-22018104,22018234-22018402,22019055-22019173,
22019250-22019440,22019746-22019957,22020905-22021500,
22022538-22022658,22023439-22023868,22024412-22024797,
22024976-22025071,22025380-22025432,22026915-22027061,
22027139-22027309,22027880-22027962,22028049-22028247,
22028668-22028789,22029752-22029818,22029960-22030010,
22030768-22031001,22031263-22031451,22032455-22032646,
22032742-22032936
Length = 1673
Score = 28.7 bits (61), Expect = 2.1
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = -3
Query: 389 WRQWNRLLCPAHPSCWDCRPLGSRRPQPVSVSMPPNRSCSSIRNPCSRQEACLLSEVPPA 210
W + + ++ P S W+ PL + PQP PP R+ R P S +++E+PP+
Sbjct: 336 WDEPSAIVRPDRVSPWELEPLDASNPQP---PQPPLRN-KRARPPAS---PSVVAELPPS 388
>08_02_1199 -
25209454-25210896,25211005-25211519,25211751-25211991,
25215330-25215625,25216320-25216464
Length = 879
Score = 28.3 bits (60), Expect = 2.8
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 230 GDMLLAVNRDSLLNCSYDSAASKLKQAEGVV 322
G+ N D+ + +YD A++LK+ EGV+
Sbjct: 807 GEQTRPWNSDAAVQAAYDGFAARLKEIEGVI 837
>04_03_0561 -
17188147-17188236,17188269-17188355,17188441-17188487,
17188670-17188740,17188898-17189346
Length = 247
Score = 28.3 bits (60), Expect = 2.8
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Frame = +1
Query: 85 GSQRHNSEKGSSGAG---HHDNRRSSHGG 162
G +RH+ GSSG G H RR HGG
Sbjct: 24 GGRRHDGAFGSSGCGGGDHGRRRRRRHGG 52
>10_01_0267 -
2828966-2829340,2831164-2831629,2833390-2833487,
2833782-2834078,2834287-2834694
Length = 547
Score = 27.9 bits (59), Expect = 3.7
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -3
Query: 365 CPAHPSCWDCRPLGSRRPQPVSVSMPPNRSCSSI 264
CP HP+ P G+ P P S+ P N + + I
Sbjct: 482 CPPHPAAAALSPPGAIAPAPASMLPPFNSTAAGI 515
>09_02_0466 +
9599389-9599662,9600324-9600643,9600950-9601186,
9601278-9601445,9601778-9601966
Length = 395
Score = 27.9 bits (59), Expect = 3.7
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 377 NRLLCPAHPSCWDCRPLGSRRPQPVS 300
+RLL P P WD P + RP P S
Sbjct: 63 SRLLGPDIPDTWDSPPRAAARPSPPS 88
>03_02_0981 +
12917195-12917572,12917661-12917818,12918732-12918765,
12918942-12919074,12919167-12919221,12919281-12920064,
12920440-12920769,12920788-12920895,12921259-12921678,
12921775-12921847,12922291-12922376,12922873-12922992,
12923086-12923156,12923350-12923449
Length = 949
Score = 27.9 bits (59), Expect = 3.7
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +2
Query: 122 GLGIMIIEGRHTEAGRGIFVSDL 190
GL ++I GRH EAG+G V++L
Sbjct: 595 GLKLLIAYGRHQEAGKGDSVTNL 617
>02_02_0431 -
10152228-10152352,10152688-10152919,10153602-10153808,
10153915-10154034,10154114-10154260,10155080-10155147,
10155502-10155667,10156765-10156914,10157219-10157335,
10158177-10158281,10159050-10159147,10159594-10159763,
10161489-10161511,10161927-10162006,10162191-10162259,
10163198-10163442,10163614-10163810
Length = 772
Score = 27.9 bits (59), Expect = 3.7
Identities = 19/77 (24%), Positives = 34/77 (44%)
Frame = +2
Query: 116 PAGLGIMIIEGRHTEAGRGIFVSDLQEGSAAEQAGLQIGDMLLAVNRDSLLNCSYDSAAS 295
P+G + I R+ G+G V L+ A+ ++ G+ L R S + +
Sbjct: 661 PSGADVEIFRRRYYSGGKGPTVKGLKGADLADGLVIKEGEYKLVKTRFSAFFATPLDSVL 720
Query: 296 KLKQAEGVVILTVCSPN 346
K + +VI+ V +PN
Sbjct: 721 KTSGIKKLVIVGVQTPN 737
>02_02_0429 -
10135695-10135769,10135872-10135972,10138416-10138532,
10138810-10139041,10142326-10142442,10142762-10142827
Length = 235
Score = 27.9 bits (59), Expect = 3.7
Identities = 17/77 (22%), Positives = 34/77 (44%)
Frame = +2
Query: 116 PAGLGIMIIEGRHTEAGRGIFVSDLQEGSAAEQAGLQIGDMLLAVNRDSLLNCSYDSAAS 295
P+G + + +G+G+ V + A+ ++ GD L R S ++ +
Sbjct: 68 PSGRDVELFRRHFYSSGKGLGVEGSKGAELADGLTIKDGDYKLVKTRFSAFFATHLDSVL 127
Query: 296 KLKQAEGVVILTVCSPN 346
K + +VI+ V +PN
Sbjct: 128 KTSGIKNLVIVGVQTPN 144
>11_06_0453 + 23781803-23781814,23782700-23782781,23783334-23784160
Length = 306
Score = 27.5 bits (58), Expect = 4.9
Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 4/83 (4%)
Frame = -3
Query: 392 WWRQWNRLLCPAHPSCWDCRPLGSRRPQPVSVSMPPNRSCSSIRNPCSRQE----ACLLS 225
W + + + P P P+ R P P V PP+R S++ +E
Sbjct: 107 WKKDKRKEIPPPPPLAETPPPMNERPPTPPPVQPPPDRETSAMVPAIVEEEKPRDRVAEL 166
Query: 224 EVPPAQQRFPLEDRTRISHGQPP 156
E P + PL T + PP
Sbjct: 167 EPPSPHKEMPLPQPTTMEMPPPP 189
>11_03_0142 + 10675764-10675991,10676533-10676943
Length = 212
Score = 27.5 bits (58), Expect = 4.9
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = -3
Query: 371 LLCPAHPSCWDCRPLGSRRPQPVSVSMPPNRSCSSIRNP 255
+LC + P+C +C+ + P P PP R + P
Sbjct: 166 MLCKSSPACPNCKFVQPSVPAPAMPRTPPRRRLEATVKP 204
>03_05_0582 +
25823862-25824459,25824915-25825063,25825691-25825960,
25826031-25826161,25826545-25826662,25826737-25826829,
25826987-25827064,25827158-25827224,25828780-25829111
Length = 611
Score = 27.5 bits (58), Expect = 4.9
Identities = 10/34 (29%), Positives = 23/34 (67%)
Frame = +2
Query: 170 GIFVSDLQEGSAAEQAGLQIGDMLLAVNRDSLLN 271
G+ V ++ AAE+ G+++GD++L+ +++ N
Sbjct: 417 GLIVREVFSQCAAEKHGIRVGDVILSCQGENISN 450
>08_02_0952 -
22981116-22981268,22981930-22981974,22982052-22982153,
22983262-22983468,22984783-22985042,22985338-22985442,
22986244-22986247,22986877-22986962,22987022-22987064
Length = 334
Score = 27.1 bits (57), Expect = 6.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 100 NSEKGSSGAGHHDNRRSSH 156
NS+KG+ G GHH + H
Sbjct: 98 NSQKGAHGMGHHHHHHKRH 116
>04_04_1461 - 33767398-33767780,33768032-33768116
Length = 155
Score = 27.1 bits (57), Expect = 6.4
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = -3
Query: 320 RRPQPVSVSMPPNRSCSSIRNPCSRQEACLLSEVPPAQQR 201
+R + V++ PP S SS NP + Q+ + + P A+++
Sbjct: 62 KRAEVVTIGPPPASSSSSSSNPSTEQQQ-IKKQAPAAEEK 100
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,700,940
Number of Sequences: 37544
Number of extensions: 263590
Number of successful extensions: 978
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -