Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31089
         (430 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   3.3  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   5.8  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   7.7  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   7.7  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   7.7  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 311 QPVSVSMPPNRSCSSI 264
           QP+SVS+PP  S  ++
Sbjct: 758 QPLSVSIPPPPSAQNV 773


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 317 VVILTVCSPNMKDAPDKED 373
           +V L VC+PN+K     +D
Sbjct: 10  LVALGVCAPNVKQRAADQD 28


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -3

Query: 341 DCRPLGSRRPQPVSVSMPPNRSCSSIRNPCSRQEACLLS 225
           D  P  +  P P S S P +     I +  +++ A LLS
Sbjct: 336 DTPPKPAPPPPPPSSSGPDSAKLDKIFDIATKENAMLLS 374


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 47  EESDDRDRFAGYKGVR 94
           E SDD   F G KG++
Sbjct: 112 ESSDDTSLFRGPKGIQ 127


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 140 IEGRHTEAGRGIFVSDL 190
           + G     GRG+F+SD+
Sbjct: 397 LNGLEGLTGRGLFISDI 413


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,020
Number of Sequences: 438
Number of extensions: 2345
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)