Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31088
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces p...   165   6e-42
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos...    27   1.8  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    25   7.2  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    25   9.5  
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S...    25   9.5  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    25   9.5  

>SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score =  165 bits (400), Expect = 6e-42
 Identities = 84/179 (46%), Positives = 126/179 (70%), Gaps = 2/179 (1%)
 Frame = +3

Query: 42  MSGKDRLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGE 221
           M+ K R  +FP+R     +K RL GA  GH LLK+K++AL+ RFR I+  I + K  MG 
Sbjct: 1   MASKQRENVFPTRMTLTTMKTRLKGAQTGHSLLKRKSEALKKRFREIVVNIEQAKQKMGR 60

Query: 222 VMKEAAFSLAEAKFTTGD-FNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQDGS-DT 395
           VM+ AAFS+AE  F  G+  N  + Q+V + ++++RSK++N++GV LP FE   D S D 
Sbjct: 61  VMQIAAFSMAEVGFAMGNNINFEIQQSVKQPRLRVRSKQENISGVFLPTFEMNLDESIDD 120

Query: 396 YELAGLARGGQQLAKLKKNFQSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVII 572
           ++L GL +GGQQ+ K ++ ++ AV+ LV+LAS Q++FV L +V+++TNRRVN+IEH+II
Sbjct: 121 FQLTGLGKGGQQIQKARQVYEKAVETLVQLASYQSAFVLLGDVLQMTNRRVNSIEHIII 179



 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 18/25 (72%), Positives = 21/25 (84%)
 Frame = +1

Query: 574 PRLERTLAYIISELDELEREEFYRL 648
           PRLE T+ YI SEL+ELERE+F RL
Sbjct: 180 PRLENTIKYIESELEELEREDFTRL 204


>SPBC119.15 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +3

Query: 483 LASLQTSFVTLDEVIKITNRRVNAIEHVIISPAG 584
           + SL       D+V+KI  +R   ++H++I   G
Sbjct: 81  MTSLNLFVTKFDQVLKILEKRAPTVDHILIDTPG 114


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +1

Query: 295  KMLPRLKSRLGPR---RTMLLVSPSQSLSHTRMVLIPMSWLV 411
            K +  L  RL PR   R M + SPS S + +  ++IP+S LV
Sbjct: 1222 KQMEALPERLRPRVKQRFMKIRSPSVSSATSVALMIPISTLV 1263


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = +3

Query: 396 YELAGLARGGQQLAKLKKNFQSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVI 569
           + L  L    Q   +LKK     ++L  EL   Q S   ++  +  TN  + A+E+++
Sbjct: 811 FNLRPLLSSTQNDKQLKKRDAEIIELKYELKKQQNSKSEVERDLVETNNSLTAVENLL 868


>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/67 (19%), Positives = 32/67 (47%)
 Frame = +3

Query: 417 RGGQQLAKLKKNFQSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIISPAGTYTR 596
           R G+ +  L ++ +  V +       Q +  + D+ +KI + R  ++ H I + +   + 
Sbjct: 337 RSGKSIMVLDEHIRQIVAMAWSPNGYQLATSSADDTVKIWDLRKVSLAHTIPAHSSLVSD 396

Query: 597 VHHLRAG 617
           V ++ +G
Sbjct: 397 VRYIESG 403


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 297 NVTKAQIKIRSKKDNVAGVTLPIFESYQDGSDTYELAGLARGGQQLAKLKK 449
           N+ K  + I SK        + +F ++QD  + Y +  LAR G+ L  + K
Sbjct: 145 NIEKEALCILSKHPGF----IKLFYTFQDAHNLYFVLSLARNGELLDYINK 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,513,295
Number of Sequences: 5004
Number of extensions: 48605
Number of successful extensions: 130
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)