Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31086
         (314 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha...    31   0.054
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    27   0.51 
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    27   0.89 
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60...    25   2.0  
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    25   2.0  
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    25   2.7  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    25   3.6  
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc...    24   4.7  
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc...    24   4.7  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    23   8.3  
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    23   8.3  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    23   8.3  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    23   8.3  
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    23   8.3  

>SPCC777.09c |arg1||acetylornithine
           aminotransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 441

 Score = 30.7 bits (66), Expect = 0.054
 Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +2

Query: 200 SITNAYKK-PVLLTQGHMQWLYDNDGKRYLDLFGGI 304
           +I + Y + PV+  +G   +L+D +G++Y+D   G+
Sbjct: 46  NIISVYARYPVVAAKGEGSYLFDKEGRKYIDFTSGV 81


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 27.5 bits (58), Expect = 0.51
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +2

Query: 50  EMANRGT--KLCFDIVRTYSTAKMPPTDF 130
           E+ANR    KLC+ I++    A +PPT+F
Sbjct: 355 EIANRPRDFKLCYWILKEIGVATIPPTEF 383


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 26.6 bits (56), Expect = 0.89
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 146  TGPSYQQVEQMKGVYMPPSITNAYKKPVLL 235
            +G SY+ V+  + VY+ PS + A KKP ++
Sbjct: 977  SGDSYRTVKSNQTVYIHPSSSVAEKKPKVI 1006


>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
           Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 582

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -3

Query: 159 YEGPVYGLGTKSVGGILAVLYVLTMSKHNFVPLLAISMCFSVEAIAIC 16
           +E P+  L  K V  +  +L  L ++     PL+ I+     EA+A C
Sbjct: 246 FENPLILLSEKKVSAVQDILPSLELAAQQRRPLVIIAEDVDGEALAAC 293


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 213 PIRSRCFSPRGTCSGYTTTT 272
           P R+ C+SP G    Y T T
Sbjct: 36  PARNACYSPNGKLFAYATAT 55


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +2

Query: 125 DFVPRPYTGPSYQQVEQMKGVYMPPSITNAYKKP 226
           D  P P   PS Q    +    MPP +T  Y +P
Sbjct: 454 DGSPDPPAAPSIQNSLSVHESEMPPHVTRDYTQP 487


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -1

Query: 170 LLVGTKVPCTVWARNPSAAFWPC 102
           + VGT     +WA  P ++ W C
Sbjct: 511 ITVGTDATLRIWALLPGSSAWKC 533


>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 517

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 276 LPSLSYNHCMCPWVRSTGF 220
           LPS S N+C   W R  GF
Sbjct: 230 LPSSSQNNCKANWKRWFGF 248


>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 553

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -3

Query: 306 TIPPNRSRYLLP-SLSYNHCMCPWVRSTGFL*AFVIEGGM*TPFICSTCWYEGPVYGLGT 130
           +IP   S YL+  ++S       W    G+   ++   G+   +  S  W  GP+ G+  
Sbjct: 27  SIPSRSSLYLIALTVSLLGVQLTWSVELGYGTPYLFSLGLRKEWT-SIIWIAGPLTGILI 85

Query: 129 KSVGGILA 106
           + + GIL+
Sbjct: 86  QPIAGILS 93


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +3

Query: 195 RLQSRTPIRSRCFSP 239
           R   RTPIRS  FSP
Sbjct: 518 REHGRTPIRSNTFSP 532


>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 204 IEGGM*TPFICSTCWYEGPVYGLGTKSVG 118
           I G     F   + W+E P  GLGT  +G
Sbjct: 315 ISGWSNNNFDAYSYWHESPNMGLGTVGMG 343


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +2

Query: 185 VYMPPSITNAYKKPVLLTQGHMQWLYDNDGKRYLDLFGGIV 307
           V+ P S  N+ K   +  Q       DN+G  Y D F  +V
Sbjct: 255 VWQPRSQKNSEKGSSIYPQNSFNASIDNEGGPYEDFFKVVV 295


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 297  PNRSRYLLPSLSYNHCMCPWVRS 229
            PN  RY +PS SY++ + P+  S
Sbjct: 2109 PNSIRYTIPSGSYSNDIKPYFYS 2131


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 204 IEGGM*TPFICSTCWYEGPVYGLGTKSVG 118
           I G     F   + W+E P  GLGT  +G
Sbjct: 315 ISGWSNNNFDAYSYWHESPNMGLGTVGMG 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,423,621
Number of Sequences: 5004
Number of extensions: 27605
Number of successful extensions: 92
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)