Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31086
         (314 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97405-5|AAB53010.3|  444|Caenorhabditis elegans Hypothetical pr...    52   7e-08
U41552-9|AAC69098.2| 1061|Caenorhabditis elegans Hypothetical pr...    29   0.93 
U39644-1|AAA80359.2|  393|Caenorhabditis elegans Hypothetical pr...    28   1.6  
Z75539-1|CAA99843.1|  672|Caenorhabditis elegans Hypothetical pr...    27   2.1  
CU457741-1|CAM36342.1|  347|Caenorhabditis elegans Hypothetical ...    27   2.1  
U80931-3|AAO91701.1|  160|Caenorhabditis elegans Hypothetical pr...    26   5.0  
U80931-2|AAB37999.1|  467|Caenorhabditis elegans Hypothetical pr...    26   5.0  
Z80215-14|CAI79138.1|  662|Caenorhabditis elegans Hypothetical p...    26   6.6  
Z80215-13|CAI79137.1|  640|Caenorhabditis elegans Hypothetical p...    26   6.6  
Z80215-12|CAB02277.1|  652|Caenorhabditis elegans Hypothetical p...    26   6.6  
AL032625-4|CAB63350.2|  792|Caenorhabditis elegans Hypothetical ...    26   6.6  
AF016449-3|AAG23997.2|  337|Caenorhabditis elegans Serpentine re...    26   6.6  
Z75552-9|CAA99945.2|  705|Caenorhabditis elegans Hypothetical pr...    25   8.7  
Z75551-6|CAA99937.2|  705|Caenorhabditis elegans Hypothetical pr...    25   8.7  
U64846-8|AAG24109.1|  331|Caenorhabditis elegans Serpentine rece...    25   8.7  
U64846-6|AAG24115.3|  336|Caenorhabditis elegans Serpentine rece...    25   8.7  

>U97405-5|AAB53010.3|  444|Caenorhabditis elegans Hypothetical
           protein T09B4.8 protein.
          Length = 444

 Score = 52.4 bits (120), Expect = 7e-08
 Identities = 23/51 (45%), Positives = 37/51 (72%)
 Frame = +2

Query: 161 QQVEQMKGVYMPPSITNAYKKPVLLTQGHMQWLYDNDGKRYLDLFGGIVTV 313
           Q+V+ ++ + +P      YK  +L+T+G  Q+L+D++GK+YLD FGGIVTV
Sbjct: 2   QRVQALRPL-LPKGHVTYYKDQLLITKGEKQFLFDSNGKKYLDFFGGIVTV 51


>U41552-9|AAC69098.2| 1061|Caenorhabditis elegans Hypothetical
           protein K07E3.1 protein.
          Length = 1061

 Score = 28.7 bits (61), Expect = 0.93
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 110 KMPPTDFVPRPYTGPSYQQVEQMKGVYMPPSITNAYKKP 226
           K+ P  + P+   G  YQQ++Q      PP + NAY+ P
Sbjct: 204 KVHPMPYHPQMNKGNHYQQLQQYT---QPPPVYNAYQPP 239


>U39644-1|AAA80359.2|  393|Caenorhabditis elegans Hypothetical
           protein T10E10.3 protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -2

Query: 184 SFHLFYLLVRRSRVRSGHEIRRRHFGRAVRSDDVEA*FCSSIS 56
           SFH   L   R+R R     R R    + RSDDV A   S+++
Sbjct: 197 SFHTCLLYYLRNRFRHFFPARTRSARNSTRSDDVPAPLLSNVT 239


>Z75539-1|CAA99843.1|  672|Caenorhabditis elegans Hypothetical
           protein F28C1.1 protein.
          Length = 672

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 33  QQRNTSKWLIEEQNYASTSSERTARPKCRRRISCPDRTRDLRTNK 167
           ++R  S+     ++ + ++S R  R K RRR    DR+RD R  K
Sbjct: 460 RERRRSRSRDRRRHRSRSTSRRRQRSKDRRRDRSRDRSRDERNEK 504


>CU457741-1|CAM36342.1|  347|Caenorhabditis elegans Hypothetical
           protein C42C1.1 protein.
          Length = 347

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -3

Query: 162 WYEGPVYGLGTKSVGGILAV-LYVLTMSKHNFVPLLAIS 49
           W+ G + G+G  + GG+LA  L ++  S ++ V LL +S
Sbjct: 135 WWIGIIIGIGLYTAGGLLAYSLAIVATSFYHTVFLLVLS 173


>U80931-3|AAO91701.1|  160|Caenorhabditis elegans Hypothetical
           protein T01B11.2b protein.
          Length = 160

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +2

Query: 224 PVLLTQGHMQWLYDNDGKRYLDLFGGI 304
           P ++++  MQ+LYD    ++LD    +
Sbjct: 50  PFMVSRASMQYLYDEKSNKFLDCISNV 76


>U80931-2|AAB37999.1|  467|Caenorhabditis elegans Hypothetical
           protein T01B11.2a protein.
          Length = 467

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +2

Query: 224 PVLLTQGHMQWLYDNDGKRYLDLFGGI 304
           P ++++  MQ+LYD    ++LD    +
Sbjct: 50  PFMVSRASMQYLYDEKSNKFLDCISNV 76


>Z80215-14|CAI79138.1|  662|Caenorhabditis elegans Hypothetical
           protein C36B1.12c protein.
          Length = 662

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 263 DNDGKRYLDLFGGIVTV 313
           D++ K +LD FGGI+T+
Sbjct: 279 DSETKGFLDRFGGIITI 295


>Z80215-13|CAI79137.1|  640|Caenorhabditis elegans Hypothetical
           protein C36B1.12b protein.
          Length = 640

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 263 DNDGKRYLDLFGGIVTV 313
           D++ K +LD FGGI+T+
Sbjct: 279 DSETKGFLDRFGGIITI 295


>Z80215-12|CAB02277.1|  652|Caenorhabditis elegans Hypothetical
           protein C36B1.12a protein.
          Length = 652

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 263 DNDGKRYLDLFGGIVTV 313
           D++ K +LD FGGI+T+
Sbjct: 279 DSETKGFLDRFGGIITI 295


>AL032625-4|CAB63350.2|  792|Caenorhabditis elegans Hypothetical
           protein Y37H9A.3 protein.
          Length = 792

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -2

Query: 193 HVNSFHLFYLLVRRSRVRSGHEIRRRHFGRAV 98
           H+   H++Y+   +S  ++G   + R + RAV
Sbjct: 138 HLKQLHVYYMKAHKSAEQAGEGPKARRYKRAV 169


>AF016449-3|AAG23997.2|  337|Caenorhabditis elegans Serpentine
           receptor, class t protein15 protein.
          Length = 337

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +2

Query: 215 YKKPVLLTQGHMQWLYD-NDGK 277
           + KPV+   G+M W++D N GK
Sbjct: 184 FTKPVIYNTGYMTWVFDPNIGK 205


>Z75552-9|CAA99945.2|  705|Caenorhabditis elegans Hypothetical
           protein W04D2.6a protein.
          Length = 705

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = +3

Query: 36  QRNTSKWLIEEQNYASTSSERTARPKCRRRISCPDRTRDLRTNK*NK*KEFTCRLQSRTP 215
           +R+ S+    E+    + S+ + R K  RR      +     +  ++   ++ R +SRTP
Sbjct: 226 RRSRSRTRSRERTSRRSRSKESPRSKRSRRSRSSSNSSSESDSSSSRSSSYSSRSRSRTP 285

Query: 216 IRSR 227
            RSR
Sbjct: 286 QRSR 289


>Z75551-6|CAA99937.2|  705|Caenorhabditis elegans Hypothetical
           protein W04D2.6a protein.
          Length = 705

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = +3

Query: 36  QRNTSKWLIEEQNYASTSSERTARPKCRRRISCPDRTRDLRTNK*NK*KEFTCRLQSRTP 215
           +R+ S+    E+    + S+ + R K  RR      +     +  ++   ++ R +SRTP
Sbjct: 226 RRSRSRTRSRERTSRRSRSKESPRSKRSRRSRSSSNSSSESDSSSSRSSSYSSRSRSRTP 285

Query: 216 IRSR 227
            RSR
Sbjct: 286 QRSR 289


>U64846-8|AAG24109.1|  331|Caenorhabditis elegans Serpentine
           receptor, class t protein19 protein.
          Length = 331

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 221 KPVLLTQGHMQWLYD 265
           KPV+ T  HM W +D
Sbjct: 181 KPVIFTPTHMSWFFD 195


>U64846-6|AAG24115.3|  336|Caenorhabditis elegans Serpentine
           receptor, class t protein20 protein.
          Length = 336

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 221 KPVLLTQGHMQWLYD 265
           KPV+ T  HM W +D
Sbjct: 181 KPVIFTPTHMSWFFD 195


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,246,205
Number of Sequences: 27780
Number of extensions: 175734
Number of successful extensions: 608
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)