Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31085
         (571 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    27   1.5  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    26   3.4  
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    26   4.5  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    26   4.5  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    25   5.9  
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc...    25   7.8  

>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 300 WRSLTRWEEDLSWPNLDRRNTGYRRLGI 217
           W S+ RW+  L++ N  +RNT    L +
Sbjct: 24  WYSVKRWQSQLTFRNKSKRNTNRIMLSV 51


>SPBC119.07 |ppk19||serine/threonine protein kinase
           Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 339 LSLWIDPMAKRSRWRSLTRWEED 271
           L  +I PM   S W +LTRW E+
Sbjct: 771 LDQFILPMVSDSVWSTLTRWYEE 793


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +1

Query: 181 ARTPDWVKDSSKDAQASISCVTSIQVGPAEVF 276
           ART  W  D SK     +S  TS   GPA +F
Sbjct: 347 ARTDFWEFDISKKVWTCLSYDTSKDGGPAAIF 378


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -2

Query: 408 ILSIVCTRKDKLHDRIIRFNNDCLSLWIDPMAKRSR 301
           +L+  C+ K++     +R  +DCLS W+    ++ R
Sbjct: 425 VLAANCSTKNQKISFFLRKGSDCLSKWVGEAERQLR 460


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -3

Query: 188 VLAN*ILQHLFNYKTILHFAPKH*YIYTNII 96
           +L+  + ++L+NYK +L FAP   ++  NII
Sbjct: 416 ILSLILFRNLYNYKELLAFAP---FVVQNII 443


>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 465

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 211 KSPLPNPGFLLTKSYNTFLITKLFCILHLNI 119
           +SP  N G L  K+YN   I+K+  I +L +
Sbjct: 373 RSPKDNQGLLEGKNYNASSISKIVNIQNLGL 403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,324,294
Number of Sequences: 5004
Number of extensions: 48438
Number of successful extensions: 97
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)