Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31085
         (571 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0490 - 6440176-6440448,6440785-6441074,6441156-6441304,644...    31   0.85 

>04_01_0490 -
           6440176-6440448,6440785-6441074,6441156-6441304,
           6441432-6441890,6441973-6442269,6442604-6443502,
           6443793-6443827,6443984-6444078,6444184-6444247,
           6446099-6446175,6446330-6446514
          Length = 940

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
 Frame = -3

Query: 329 GSTQWLREVDGDH*PDGKKTSAGPTWIDVTQDIDAWASLEESFTQSG-VLAN*ILQHLFN 153
           G  + LR ++G+  P       GP+    T  ++A       +  SG VL N    ++ +
Sbjct: 362 GKKKLLRSINGELRPGRVTAVMGPSGAGKTTFLNAVTGKVAGYKVSGSVLVNGRHDNIRS 421

Query: 152 YKTILHFAPKH*YIYTNIIKRKDLF 78
           YK I+ F P+   ++ N+   ++L+
Sbjct: 422 YKKIIGFVPQDDVVHGNLTVEENLW 446


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,966,254
Number of Sequences: 37544
Number of extensions: 281521
Number of successful extensions: 559
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)