Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31085
         (571 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99709-1|CAB16858.1|  488|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with...    27   9.5  
U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with...    27   9.5  
U23519-12|AAK31505.3| 1021|Caenorhabditis elegans Hypothetical p...    27   9.5  
AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans nonsense-medi...    27   9.5  

>Z99709-1|CAB16858.1|  488|Caenorhabditis elegans Hypothetical
           protein C47B2.1 protein.
          Length = 488

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 193 PGFLLTKSYNTFLITKLFCILHLNIN 116
           P F LTK    F ITK FC++  ++N
Sbjct: 38  PYFFLTKCSLNFRITKFFCVVFGSLN 63


>U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 1, isoform a
           protein.
          Length = 2322

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 8/34 (23%), Positives = 20/34 (58%)
 Frame = -2

Query: 387 RKDKLHDRIIRFNNDCLSLWIDPMAKRSRWRSLT 286
           R   +H  ++ +NN+C++  +  ++  ++W  LT
Sbjct: 596 RNTVIHQSVLTWNNECVNQALTILSTATKWSELT 629


>U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 1, isoform b
           protein.
          Length = 2019

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 8/34 (23%), Positives = 20/34 (58%)
 Frame = -2

Query: 387 RKDKLHDRIIRFNNDCLSLWIDPMAKRSRWRSLT 286
           R   +H  ++ +NN+C++  +  ++  ++W  LT
Sbjct: 596 RNTVIHQSVLTWNNECVNQALTILSTATKWSELT 629


>U23519-12|AAK31505.3| 1021|Caenorhabditis elegans Hypothetical
           protein F26G1.1 protein.
          Length = 1021

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -2

Query: 405 LSIVCTR-KDKLHDRIIRFNNDCLSLWIDPMAKRSRWRSLTRW 280
           L+I+C++  D L     R +    S+ IDP+ +   WR L  W
Sbjct: 392 LAIMCSQFNDDLSSIFARVHITRYSMLIDPLNRTPHWRVLHDW 434


>AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans
           nonsense-mediated mRNA decay proteinSMG-1 protein.
          Length = 2322

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 8/34 (23%), Positives = 20/34 (58%)
 Frame = -2

Query: 387 RKDKLHDRIIRFNNDCLSLWIDPMAKRSRWRSLT 286
           R   +H  ++ +NN+C++  +  ++  ++W  LT
Sbjct: 596 RNTVIHQSVLTWNNECVNQALTILSTATKWSELT 629


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,761,225
Number of Sequences: 27780
Number of extensions: 270893
Number of successful extensions: 535
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)