Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31080
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    23   2.1  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    23   2.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.7  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   4.8  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   8.3  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 352 CWIHFRKEKGFKVHWNAGRLENFL 281
           C++   KE+GF  +W  G L N +
Sbjct: 59  CFVRIPKEQGFLSYWR-GNLANVI 81


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 352 CWIHFRKEKGFKVHWNAGRLENFL 281
           C++   KE+GF  +W  G L N +
Sbjct: 59  CFVRIPKEQGFLSYWR-GNLANVI 81


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +1

Query: 223 YQMHLDSWGW 252
           +Q HLD W W
Sbjct: 620 HQQHLDQWNW 629


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -2

Query: 685 ESEFRDTLGFRCGDDLQTLHHAGNG 611
           ESEF D   ++C D    +   G G
Sbjct: 57  ESEFNDENYWQCNDKKTDIEETGRG 81


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +3

Query: 567 SESRPRESTQLWNMNPFPAW 626
           ++  PR    LW++ P  AW
Sbjct: 90  AKHNPRGKDALWSLVPHMAW 109


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,909
Number of Sequences: 438
Number of extensions: 4780
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)