Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31078
         (616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    23   2.4  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   4.1  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   5.5  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   9.6  

>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 388 FCHNLINNYIIIRLP 432
           FCH++I   +II+LP
Sbjct: 13  FCHSIIQIPVIIQLP 27


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -3

Query: 191 IIR*DLFNKYSHSHQR 144
           I+  +L+ KYSH+H++
Sbjct: 61  ILEYELYIKYSHTHEK 76


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 367 YFFMKS*NPILVQLMS 320
           Y+F  + NPIL  LMS
Sbjct: 317 YYFSTTINPILYNLMS 332


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 91  FLVVKLLFP*IPSDTDKKSHTIHNDTQY 8
           F  ++ + P +PSD   K  T+   T+Y
Sbjct: 273 FAALRKIIPTLPSDKLSKIQTLKLATRY 300


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,523
Number of Sequences: 438
Number of extensions: 2998
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)