Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31074
         (729 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK022609-1|BAB14128.1|  307|Homo sapiens protein ( Homo sapiens ...    32   1.8  
AB065580-1|BAC05810.1|  346|Homo sapiens seven transmembrane hel...    31   4.2  
AK127601-1|BAC87052.1|  415|Homo sapiens protein ( Homo sapiens ...    30   9.8  

>AK022609-1|BAB14128.1|  307|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12547 fis, clone NT2RM4000634. ).
          Length = 307

 Score = 32.3 bits (70), Expect = 1.8
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 676 VCICMCIYINIYV-VVRCVFKAFNITMYVWPNFC 578
           VC+C+C++++I V V  CV+    +   VW + C
Sbjct: 191 VCVCLCVWVHICVCVCLCVWVHICVCACVWVHIC 224


>AB065580-1|BAC05810.1|  346|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 346

 Score = 31.1 bits (67), Expect = 4.2
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -3

Query: 688 MTLAVCICMCIYINIYVVVR---CVFKAFNITMYVWPNFC 578
           ++L VC+C+C+ +++YV V    CV+    + MYV    C
Sbjct: 151 LSLRVCVCVCLCVSVYVCVSSYLCVYLC--VCMYVCECVC 188


>AK127601-1|BAC87052.1|  415|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45698 fis, clone FEBRA2017811. ).
          Length = 415

 Score = 29.9 bits (64), Expect = 9.8
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = +3

Query: 576 LQKFGHTYIVILNALKTH---RTTTYIFIYMHIHMHT-ASVINHAH 701
           +  + HT+I     + +H    T T+  I+MH+H HT      HAH
Sbjct: 269 MDTYPHTHIHTCTHMHSHAHINTHTHAHIHMHMHTHTHTHTYTHAH 314


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,269,049
Number of Sequences: 237096
Number of extensions: 1724768
Number of successful extensions: 3190
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3105
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8623170556
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)