Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31074
         (729 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical pr...    31   0.64 
Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical pr...    31   0.64 
U46753-2|AAA85760.1|  894|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AC199158-9|ABO33285.1|  229|Caenorhabditis elegans Hypothetical ...    28   5.9  
AC199158-5|ABO33288.1|  229|Caenorhabditis elegans Hypothetical ...    28   5.9  

>Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical protein
            F22G12.5 protein.
          Length = 2396

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
 Frame = +1

Query: 91   RVQRAVSKDSIQISSRKQLDRTRRGSTT-----THVEPRIP 198
            + QR V  D +QI + +QLD ++   T      THVEP IP
Sbjct: 2115 KCQRQVGHDRVQIEANEQLDLSKIDPTVAYVQITHVEPSIP 2155


>Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical protein
            F22G12.5 protein.
          Length = 2396

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
 Frame = +1

Query: 91   RVQRAVSKDSIQISSRKQLDRTRRGSTT-----THVEPRIP 198
            + QR V  D +QI + +QLD ++   T      THVEP IP
Sbjct: 2115 KCQRQVGHDRVQIEANEQLDLSKIDPTVAYVQITHVEPSIP 2155


>U46753-2|AAA85760.1|  894|Caenorhabditis elegans Hypothetical
           protein C34F11.5 protein.
          Length = 894

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +1

Query: 109 SKDSIQISSRKQLDRTRRGSTTTHVEPRIPTTLLNTNKLWVV*FSRTITRKSIV 270
           S++   +  +K+  R +RG     + PRIP  +    KL  V   + + RK IV
Sbjct: 632 SRNGKLVRIKKKTKRVKRGKFVRPLMPRIPKFVAKKKKLKKVDGKKVLKRKEIV 685


>AC199158-9|ABO33285.1|  229|Caenorhabditis elegans Hypothetical
           protein AC8.12 protein.
          Length = 229

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 103 AVSKDSIQISSRKQLDRTRRGSTTTHVEPRI 195
           A SKD I +S ++  D TRRG   T +  R+
Sbjct: 128 ATSKDGIVVSQQQLRDLTRRGCPDTLIRSRV 158


>AC199158-5|ABO33288.1|  229|Caenorhabditis elegans Hypothetical
           protein AC8.7 protein.
          Length = 229

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 103 AVSKDSIQISSRKQLDRTRRGSTTTHVEPRI 195
           A SKD I +S ++  D TRRG   T +  R+
Sbjct: 128 ATSKDGIVVSQQQLRDLTRRGCPDTLIRSRV 158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,570,838
Number of Sequences: 27780
Number of extensions: 303722
Number of successful extensions: 849
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)