Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31071
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.06c |||ribose-phosphate pyrophosphokinase |Schizosaccha...    28   1.3  
SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit...    28   1.7  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   2.2  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   6.7  
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom...    25   8.9  

>SPCC1620.06c |||ribose-phosphate pyrophosphokinase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 321

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 23/92 (25%), Positives = 36/92 (39%)
 Frame = -2

Query: 759 LARVVLRRIYHGIGKRDPLRRSGEKLSGLCLRVNLLVEPFVASDGFDENGDRCLKYLKAP 580
           LA  V RRI   +GK   ++ S  + S          + F+   G     D  ++ L   
Sbjct: 17  LAEKVARRIGLSLGKVAVVQYSNRETSVTIGESVRDEDVFILQTGCGSINDHLMELLIMI 76

Query: 579 LVDREDPR*RVLGDVDCFPFCPQDRECSYRRP 484
              R     R+   + CFP+  QD++   R P
Sbjct: 77  NACRSASARRITAIIPCFPYARQDKKDKSRAP 108


>SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit
           Skp1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 161

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 760 PSKSRASQNLPRDRKTRPTEKIRRETQWA 674
           P   R + N+P D      E+IR+E +WA
Sbjct: 130 PEDIRKTFNIPNDFTPEEEEQIRKENEWA 158


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +3

Query: 261 SILIFKMFSFMFPL*MLGKVSFVNKKIKRKNIYLKNCQKMRLINKP 398
           S+ I + +S+M  L +  K  +V K  K  +IYL NC+K+ +   P
Sbjct: 270 SLSICRNYSYMDIL-LSKKSKYVKKLEKYWSIYLSNCKKLGISTLP 314


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 546 KHVISDPPDPLTVLLGTSSTGH 611
           +H++ +PP PLTVL      GH
Sbjct: 499 RHILDNPPKPLTVLDIYFQIGH 520


>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 332

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 451 IKRHDT-RTLSSWPPVTTFPILRTEWKAVDV 540
           I R DT + + S PPVT    ++  WKA+D+
Sbjct: 47  IIRSDTIQLVISCPPVTYSDEIQVPWKAIDL 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,755,344
Number of Sequences: 5004
Number of extensions: 51442
Number of successful extensions: 140
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)