Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31071
         (760 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0475 + 29610268-29610711                                         28   7.0  
11_04_0210 + 14882358-14882419,14882785-14882815,14884197-14884370     28   9.3  

>01_06_0475 + 29610268-29610711
          Length = 147

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +2

Query: 608 SPFSSNPSLATKGSTSKLTLRHSPLSFSPD 697
           SP SS+P      S+++ TL HSP S SPD
Sbjct: 54  SPMSSSPP---SRSSTRATLTHSPSSASPD 80


>11_04_0210 + 14882358-14882419,14882785-14882815,14884197-14884370
          Length = 88

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 760 PSKSRASQNLPRDRKTRPTEKIRRETQWA 674
           P + R + N+  D      E+IRRE QWA
Sbjct: 58  PEEIRKTFNIKNDFTPEEEEEIRRENQWA 86


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,491,298
Number of Sequences: 37544
Number of extensions: 337820
Number of successful extensions: 854
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)