Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31071
         (760 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97192-2|AAO38678.1|  622|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U97192-1|AAB52434.2|  986|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AL032655-6|CAA21722.1|  462|Caenorhabditis elegans Hypothetical ...    28   6.3  
U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated p...    28   8.3  
U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated p...    28   8.3  
M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related...    28   8.3  
AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical ...    28   8.3  

>U97192-2|AAO38678.1|  622|Caenorhabditis elegans Hypothetical
           protein C01F4.2b protein.
          Length = 622

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = +2

Query: 527 KQSTSPKTRHLGSSRSTNGAFRYFKHRSPFSSNPSLATKGSTS--KLTLRHSPLSFS 691
           + STS +     S       +R FKHR+ F S  S   K      +LTLRH  +  S
Sbjct: 110 QMSTSRRLAGFASRSIRKSQWRLFKHRTFFGSQRSSMKKNQLQLPRLTLRHPSIDSS 166


>U97192-1|AAB52434.2|  986|Caenorhabditis elegans Hypothetical
           protein C01F4.2a protein.
          Length = 986

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = +2

Query: 527 KQSTSPKTRHLGSSRSTNGAFRYFKHRSPFSSNPSLATKGSTS--KLTLRHSPLSFS 691
           + STS +     S       +R FKHR+ F S  S   K      +LTLRH  +  S
Sbjct: 110 QMSTSRRLAGFASRSIRKSQWRLFKHRTFFGSQRSSMKKNQLQLPRLTLRHPSIDSS 166


>AL032655-6|CAA21722.1|  462|Caenorhabditis elegans Hypothetical
           protein Y6B3B.11 protein.
          Length = 462

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -2

Query: 645 PFVASDGFDENGDRCLK-YLKAPLVDREDPR*RVLGDVDCFPFCPQDRECSYR 490
           P V S   D+  ++ L  Y++  LVD  +PR RVL     F  C  D EC+ +
Sbjct: 85  PAVISTKVDKEVEKRLPMYIQIVLVDVLEPRGRVLKHHVAFVKCSFDDECTMK 137


>U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated
           protein 104, isoforma protein.
          Length = 1584

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 512 CGQNGKQSTSPKTRHLGSSRSTNGAFRYFKHRSPFSSNPS 631
           C  NGKQ T+P   H G SR   G    F++  P  +  S
Sbjct: 533 CYINGKQVTTPTVLHTG-SRVILGEHHVFRYNDPQEARQS 571


>U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated
           protein 104, isoformb protein.
          Length = 1628

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 512 CGQNGKQSTSPKTRHLGSSRSTNGAFRYFKHRSPFSSNPS 631
           C  NGKQ T+P   H G SR   G    F++  P  +  S
Sbjct: 533 CYINGKQVTTPTVLHTG-SRVILGEHHVFRYNDPQEARQS 571


>M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related
           protein protein.
          Length = 1584

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 512 CGQNGKQSTSPKTRHLGSSRSTNGAFRYFKHRSPFSSNPS 631
           C  NGKQ T+P   H G SR   G    F++  P  +  S
Sbjct: 533 CYINGKQVTTPTVLHTG-SRVILGEHHVFRYNDPQEARQS 571


>AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical
           protein Y40B1A.5 protein.
          Length = 134

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 510 PADRMESSRRRPKHVISDPPDP 575
           P     ++RRR +HV+S PP P
Sbjct: 4   PVVEFTTARRRKRHVVSTPPPP 25


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,304,255
Number of Sequences: 27780
Number of extensions: 297603
Number of successful extensions: 657
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)