Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31067
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    61   2e-10
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    55   8e-09
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    48   2e-06
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    44   1e-05
SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1 |Schi...    27   2.3  
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13...    25   7.1  
SPAC823.05c |tlg2||SNARE Tlg2|Schizosaccharomyces pombe|chr 1|||...    25   9.3  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   9.3  

>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 32/73 (43%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = +2

Query: 290  IYIYTGIVA-ALVAVTLLRSFMFFWIAMRASTRLHNNMFAAITRAPMRFFHVNPSGRILN 466
            IY   G+++ AL++++ L   +F   A+++   LH++M  A+ RAPM FF   P+GRILN
Sbjct: 946  IYTLFGLLSCALISLSSLTITVF--CAIKSCRYLHDSMVKAVLRAPMSFFETTPTGRILN 1003

Query: 467  RFSKDMGAVDEVL 505
            RFS D+  VDEV+
Sbjct: 1004 RFSSDVYRVDEVI 1016


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1465

 Score = 55.2 bits (127), Expect = 8e-09
 Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
 Frame = +2

Query: 290  IYIYTGIVA-ALVAVTLLRSFMFFWIAMRASTRLHNNMFAAITRAPMRFFHVNPSGRILN 466
            IY++ G ++ A ++ + L   M     +R+   LH++M   I RAPM FF    SGRILN
Sbjct: 948  IYLFFGFLSCAFISSSSLT--MTVLCGIRSGRYLHDSMLKTILRAPMGFFETTSSGRILN 1005

Query: 467  RFSKDMGAVDEVL 505
            RFS D+  VDEV+
Sbjct: 1006 RFSNDVYKVDEVV 1018


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1427

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 27/86 (31%), Positives = 45/86 (52%)
 Frame = +2

Query: 248  NAIFSDVGLSRYDCIYIYTGIVAALVAVTLLRSFMFFWIAMRASTRLHNNMFAAITRAPM 427
            N++FS    S +  ++ Y  ++     + L R+  F      AS  +H+ +   +  +P+
Sbjct: 889  NSLFSLKLPSSFSFLWGYAILLFIYFLMDLSRAITFAKGGRTASENIHDILSERVLYSPL 948

Query: 428  RFFHVNPSGRILNRFSKDMGAVDEVL 505
             +F    +GRILNRFSKDM A D +L
Sbjct: 949  HWFEKTAAGRILNRFSKDMYATDNLL 974


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
            Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 44.4 bits (100), Expect = 1e-05
 Identities = 21/69 (30%), Positives = 41/69 (59%)
 Frame = +2

Query: 290  IYIYTGIVAALVAVTLLRSFMFFWIAMRASTRLHNNMFAAITRAPMRFFHVNPSGRILNR 469
            +++Y  ++ A   +  LR+  +   A  AS +LH++M  ++      +F   P+GRI+NR
Sbjct: 937  LFVYGTMLLAYSLLDFLRTVSYDRGAWWASRKLHDSMLESVFGTFASWFDKTPTGRIVNR 996

Query: 470  FSKDMGAVD 496
            F+KD+ ++D
Sbjct: 997  FAKDIRSID 1005


>SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 342

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 233 PRLVNFPSHFDHRKCATYEMRNFSLLT 153
           P+ VNF    DHR      +RNFS LT
Sbjct: 139 PQSVNFLDITDHRAVLENALRNFSTLT 165


>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 777

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 281 YDCIYIYTGIVAALVAVTL 337
           Y CI+++TG  A++ AV L
Sbjct: 400 YKCIHVFTGHTASVTAVAL 418


>SPAC823.05c |tlg2||SNARE Tlg2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 149 VKLEEKNYASHTLRTFDDRNE 211
           + L +K YA H L +F D+ E
Sbjct: 76  INLLDKQYAKHVLPSFSDKTE 96


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +2

Query: 254 IFSDVGLSRYDCIYIYTGIVAALVA-VTLLRSFMFFWIAMRASTRLHNNMFAAI 412
           + SD     +DCI I  G+VA  +A + L  ++ F +  + A +   N +F  +
Sbjct: 376 LISDAIHMAFDCIAILVGLVATTLAKMPLNYAYPFGFAKIEALSGFTNGIFLVL 429


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,068,088
Number of Sequences: 5004
Number of extensions: 36438
Number of successful extensions: 114
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)