Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31066
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               26   0.30 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.8  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   3.7  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   4.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.9  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 396 LWQPSSPLKR*QPITRRLPTLTLSVETRWLRPLEKLYW 509
           L QP  P+K  +     L + T +++TR + P + L W
Sbjct: 436 LMQPKQPIKLFEQWKSILESGTTTLQTRTMHPYDHLVW 473


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = -3

Query: 259 LDQLLSFLQVSLRELHDSTSTXNGFRKECR 170
           LD  L  LQ  L E    TST       CR
Sbjct: 73  LDTFLRELQADLAEASQPTSTTTSVTPSCR 102


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -3

Query: 352 LHAVRLEAPKMISSTTEACL-YLISYIQATILLDQLLSFLQVSLRELHDSTSTXNGFRKE 176
           L  + ++AP  ISS TE+ L   I  +    +LD  +S  ++ + E  D+TS  +  +K+
Sbjct: 330 LQELHVDAPTWISSVTESVLKSKIGQVFLITILDSKVS-ARIEMNE-DDNTSLVSLDKKQ 387


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 340 RLEAPKMISSTTEACLYLISY 278
           R + PK+ISS + +C Y  +Y
Sbjct: 297 RSKEPKIISSLSNSCNYSNNY 317


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = +3

Query: 96  SASALTNMSTNLTS 137
           SAS +TN++TNLT+
Sbjct: 952 SASNVTNVTTNLTT 965


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 506 LEVIEEEGLQQNSKVVGEYFIMQLMDLQKQHPLIGDVRGQGL 631
           L + ++  +QQ      +Y + Q + LQ  +P  G   G+GL
Sbjct: 179 LALQQQRLIQQLQITQSQYLLQQGLGLQGHNPSSGLQPGEGL 220


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,609
Number of Sequences: 438
Number of extensions: 4308
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)